2D4Z | pdb_00002d4z

Crystal structure of the cytoplasmic domain of the chloride channel ClC-0


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 
    0.309 (Depositor), 0.305 (DCC) 
  • R-Value Work: 
    0.274 (Depositor), 0.270 (DCC) 
  • R-Value Observed: 
    0.274 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Crystal structure of the cytoplasmic domain of the chloride channel ClC-0.

Meyer, S.Dutzler, R.

(2006) Structure 14: 299-307

  • DOI: https://doi.org/10.1016/j.str.2005.10.008
  • Primary Citation Related Structures: 
    2D4Z

  • PubMed Abstract: 

    Ion channels are frequently organized in a modular fashion and consist of a membrane-embedded pore domain and a soluble regulatory domain. A similar organization is found for the ClC family of Cl- channels and transporters. Here, we describe the crystal structure of the cytoplasmic domain of ClC-0, the voltage-dependent Cl- channel from T. marmorata. The structure contains a folded core of two tightly interacting cystathionine beta-synthetase (CBS) subdomains. The two subdomains are connected by a 96 residue mobile linker that is disordered in the crystals. As revealed by analytical ultracentrifugation, the domains form dimers, thereby most likely extending the 2-fold symmetry of the transmembrane pore. The structure provides insight into the organization of the cytoplasmic domains within the ClC family and establishes a framework for guiding future investigations on regulatory mechanisms.


  • Organizational Affiliation
    • Department of Biochemistry, University of Zürich, Winterthurer Strasse 190, CH-8057 Zürich, Switzerland.

Macromolecule Content 

  • Total Structure Weight: 55.57 kDa 
  • Atom Count: 2,468 
  • Modeled Residue Count: 340 
  • Deposited Residue Count: 500 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Chloride channel protein
A, B
250Torpedo marmorataMutation(s): 0 
UniProt
Find proteins for P21564 (Torpedo marmorata)
Explore P21564 
Go to UniProtKB:  P21564
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP21564
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free:  0.309 (Depositor), 0.305 (DCC) 
  • R-Value Work:  0.274 (Depositor), 0.270 (DCC) 
  • R-Value Observed: 0.274 (Depositor) 
Space Group: P 21 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 125.819α = 90
b = 125.819β = 90
c = 125.819γ = 90
Software Package:
Software NamePurpose
CNSrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SHARPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-02-14
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2024-03-13
    Changes: Data collection, Database references