2CST | pdb_00002cst

CRYSTAL STRUCTURE OF THE CLOSED FORM OF CHICKEN CYTOSOLIC ASPARTATE AMINOTRANSFERASE AT 1.9 ANGSTROMS RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Observed: 
    0.175 (Depositor) 

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Literature

Crystal structure of the closed form of chicken cytosolic aspartate aminotransferase at 1.9 A resolution.

Malashkevich, V.N.Strokopytov, B.V.Borisov, V.V.Dauter, Z.Wilson, K.S.Torchinsky, Y.M.

(1995) J Mol Biology 247: 111-124

  • DOI: https://doi.org/10.1006/jmbi.1994.0126
  • Primary Citation Related Structures: 
    2CST

  • PubMed Abstract: 

    The crystal structure of chicken cytosolic aspartate aminotransferase (cAATase; EC 2.6.1.1) has been solved and refined at 1.9 A resolution. Orthorhombic crystals, space group P2(1)2(1)2(1), a = 56.4 A, b = 126.0 A and c = 142.3 A, were grown from polyethylene glycol solutions in the presence of maleate, a dicarboxylic inhibitor that forms a Michaelis-like complex. The pyridoxal form of the enzyme was used for crystallization. Diffraction data were collected using synchrotron radiation. The structure of the new orthorhombic crystal form was solved by molecular replacement using the partially refined 2.8 A resolution structure of the high-salt crystal form as a search model. The final value of the crystallographic R-factor after rigid body and restrained least-squares refinement is 0.175 with very good model geometry. The two 2-fold-related subunits of cAATase have distinct environments in the crystal lattice. Domain movement is strictly hindered by the lattice contacts in one subunit, while the second one possesses conformational freedom. Despite their different environments, both subunits were found in the closed conformation with one maleate molecule tightly bound in each active site. The present study allows a detailed comparison of the highly refined structures of the aspartate aminotransferase isozymes, and thus provide better insight into the role of conserved and variable residues in substrate recognition and catalysis.


  • Organizational Affiliation
    • Institute of Molecular Biology, Academy of Sciences of the Russia, Moscow.

Macromolecule Content 

  • Total Structure Weight: 92.44 kDa 
  • Atom Count: 7,274 
  • Modeled Residue Count: 822 
  • Deposited Residue Count: 822 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ASPARTATE AMINOTRANSFERASE
A, B
411Gallus gallusMutation(s): 0 
EC: 2.6.1.1 (PDB Primary Data), 2.6.1.3 (UniProt)
UniProt
Find proteins for P00504 (Gallus gallus)
Explore P00504 
Go to UniProtKB:  P00504
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00504
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Observed: 0.175 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.4α = 90
b = 126β = 90
c = 124.3γ = 90
Software Package:
Software NamePurpose
TNTrefinement

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1994-11-30
    Type: Initial release
  • Version 1.1: 2008-03-03
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Non-polymer description, Version format compliance
  • Version 1.3: 2017-11-29
    Changes: Derived calculations, Other
  • Version 1.4: 2025-03-26
    Changes: Data collection, Database references, Derived calculations, Structure summary