2BIC

The solution structure of the recombinant elicitor protein PcF from the oomycete pathogen P. cactorum


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: LOWEST ENERGY 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Solution Structure of the Phytotoxic Protein Pcf: The First Characterized Member of the Phytophthora Pcf Toxin Family.

Nicastro, G.Orsomando, G.Ferrari, E.Manconi, L.Desario, F.Amici, A.Naso, A.Carpaneto, A.Pertinhez, T.A.Ruggieri, S.Spisni, A.

(2009) Protein Sci 18: 1786

  • DOI: https://doi.org/10.1002/pro.168
  • Primary Citation of Related Structures:  
    2BIC

  • PubMed Abstract: 

    The PcF protein from Phytophthora cactorum is the first member of the "PcF toxin family" from the plant pathogens Phytophthora spp. It is able to induce withering in tomato and strawberry leaves. The lack of sequence similarity with other proteins hampers the identification of the molecular mechanisms responsible for its toxicity. Here, we show that the six cysteines form a disulphide pattern that is exclusive for PcF and essential for the protein withering activity. The NMR solution structure identifies a novel fold among protein effectors: a helix-loop-helix motif. The presence of a negatively charged surface suggests that it might act as a site of electrostatic interaction. Interestingly, a good fold match with Ole e 6, a plant protein with allergenic activity, highlighted the spatial superimposition of a stretch of identical residues. This finding suggests a possible biological activity based on molecular mimicry.


  • Organizational Affiliation

    National Institute for Medical Research (NIMR-MRC), The Ridgeway, London NW7 1AA, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PHYTOTOXIC PROTEIN PCF52Phytophthora cactorumMutation(s): 0 
UniProt
Find proteins for Q94FS7 (Phytophthora cactorum)
Explore Q94FS7 
Go to UniProtKB:  Q94FS7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ94FS7
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: LOWEST ENERGY 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-06-28
    Type: Initial release
  • Version 1.1: 2014-02-05
    Changes: Database references, Derived calculations, Other, Source and taxonomy, Structure summary
  • Version 1.2: 2020-01-15
    Changes: Data collection, Other
  • Version 1.3: 2024-10-09
    Changes: Data collection, Database references, Structure summary