2BAZ

Structure of YosS, a putative dUTPase from Bacillus subtilis

• PDB DOI: https://doi.org/10.2210/pdb2BAZ/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Bacillus subtilis
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2005-10-16 Released: 2006-10-17 
• Deposition Author(s): Liang, Y.-H., Wang, J., Su, X.-D.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.243 
• R-Value Work: 0.217 
• R-Value Observed: 0.225 

Literature

Structure of YosS, a putative dUTPase from Bacillus subtilis

Wang, J., Liang, Y.-H., Su, X.-D.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 48.52 kDa 
• Atom Count: 3,191 
• Modelled Residue Count: 384 
• Deposited Residue Count: 426 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein BSU20020	A, B, C	142	Bacillus subtilis	Mutation(s): 0  EC: 3.6.1.23
UniProt
Find proteins for O34919 (Bacillus subtilis (strain 168)) Explore O34919  Go to UniProtKB:  O34919

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.243 
• R-Value Work: 0.217 
• R-Value Observed: 0.225 
• Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 116.5	α = 90
b = 116.5	β = 90
c = 56.8	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
RESOLVE	phasing
CNS	refinement
PDB_EXTRACT	data extraction
MAR345	data collection

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-10-17 
Deposition Author(s): Liang, Y.-H., Wang, J., Su, X.-D.

Revision History  

• Version 1.0: 2006-10-17
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-11
  Changes: Refinement description
• Version 1.4: 2024-03-13
  Changes: Data collection, Database references