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 28XG | pdb_000028xg

DIT3 nanofibril


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.78 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 

wwPDB Validation 3D Report Full Report

Validation slider image for 28XG

This is version 1.0 of the entry. See complete history. 

Literature

Sequence-encoded hexagonal lattices in multichannel peptide nanofibrils.

Gacanin, J., Mazzotta, F., Baptista, L.A., Stoyanov, N., Schmidt, M., Alleva, N., Thummaraj, T., Bonnicel, F., Zhou, C., Gao, L., Munch, J., Bonn, M., Fandrich, M., Lieberwirth, I., Cortes-Huerto, R., Landfester, K., Weil, T.

(2026) Nature 657: 935-943

  • DOI: https://doi.org/10.1038/s41586-026-11016-2
  • Primary Citation Related Structures: 
    28XG, 28XH

  • PubMed Abstract: 

    Structural complexity in biological matter arises from molecular information that encodes supramolecular assembly across length scales 1-3 . Here we show that minimal nine-residue peptides can encode discrete lateral interaction motifs that direct supramolecular organization. These motifs generate hexagonal pores and hierarchically tile into multichannel nanofibrils with defined topology. Sequence-encoded amphiphilicity combines a cross-β-dimer, an inversion point and a trimeric junction to create complementary interfaces that couple lateral growth to axial stacking, yielding honeycomb lattices with continuous approximately 5-nm solvent-accessible nanochannels. Cryo-electron microscopy resolves the supramolecular architecture and shows that lattice symmetry and pore geometry are preserved across variants. Systematic perturbations establish sequence-structure rules linking residue position to supramolecular symmetry, lattice propagation and channel topology. Molecular dynamics simulations and vibrational spectroscopy show that the channels remain water accessible and show sequence-tunable hydration. These findings establish that a minimal, sequence-encoded interaction hierarchy can programme long-range supramolecular order, providing a general framework for how short peptides can encode complex, symmetry-defined architectures 4-12 .


  • Organizational Affiliation: 
    • Max Planck Institute for Polymer Research, Mainz, Germany.

Macromolecule Content 

  • Total Structure Weight: 32.29 kDa 
  • Atom Count: 2,229 
  • Modeled Residue Count: 270 
  • Deposited Residue Count: 270 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
nanofibril peptide (KVRVSQINM)9synthetic constructMutation(s): 0 
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.78 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.71

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanySFB 1279/Z03 and A03

Revision History  (Full details and data files)

  • Version 1.0: 2026-10-07
    Type: Initial release