28TN | pdb_000028tn

Structure of a lambda repressor-like protein

PDB DOI: https://doi.org/10.2210/pdb28TN/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Klebsiella pneumoniae
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2026-02-18 Released: 2026-03-11
Deposition Author(s): Rieger, D., Schlegel, P., Klier, J., Schoeder, C.
Funding Organization(s): Other private

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.11 Å
R-Value Free:
0.259 (Depositor), 0.259 (DCC)
R-Value Work:
0.213 (Depositor), 0.213 (DCC)
R-Value Observed:
0.215 (Depositor)

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 28TN

This is version 1.1 of the entry. See complete history.

Literature

Exploration of de novo protein properties and identification of similar natural protein

Klier, J., Rieger, D., Ertelt, M., Fiedler, E., Haupts, U., Meiler, J., Schoeder, C.

To be published.

Macromolecule Content

Total Structure Weight: 55.07 kDa
Atom Count: 3,118
Modeled Residue Count: 395
Deposited Residue Count: 492
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
lambda repressor-like protein	A, B, C, D, E A, B, C, D, E, F	82	Klebsiella pneumoniae	Mutation(s): 0 Gene Names: C3F40_05195

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain V [auth F] SDF format, chain T [auth E] SDF format, chain S [auth E] SDF format, chain R [auth D] SDF format, chain Q [auth D] SDF format, chain P [auth D] SDF format, chain M [auth C] SDF format, chain L [auth C] SDF format, chain K [auth B] SDF format, chain J [auth B] SDF format, chain I [auth A] SDF format, chain H [auth A] SDF format, chain G [auth A] MOL2 format, chain V [auth F] MOL2 format, chain T [auth E] MOL2 format, chain S [auth E] MOL2 format, chain R [auth D] MOL2 format, chain Q [auth D] MOL2 format, chain P [auth D] MOL2 format, chain M [auth C] MOL2 format, chain L [auth C] MOL2 format, chain K [auth B] MOL2 format, chain J [auth B] MOL2 format, chain I [auth A] MOL2 format, chain H [auth A] MOL2 format, chain G [auth A] mmCIF format, chain V [auth F] mmCIF format, chain T [auth E] mmCIF format, chain S [auth E] mmCIF format, chain R [auth D] mmCIF format, chain Q [auth D] mmCIF format, chain P [auth D] mmCIF format, chain M [auth C] mmCIF format, chain L [auth C] mmCIF format, chain K [auth B] mmCIF format, chain J [auth B] mmCIF format, chain I [auth A] mmCIF format, chain H [auth A] mmCIF format, chain G [auth A]	G [auth A] H [auth A] I [auth A] J [auth B] K [auth B] G [auth A], H [auth A], I [auth A], J [auth B], K [auth B], L [auth C], M [auth C], P [auth D], Q [auth D], R [auth D], S [auth E], T [auth E], V [auth F]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth B] Focus chain K [auth B] Focus chain L [auth C] Focus chain M [auth C] Focus chain P [auth D] Focus chain Q [auth D] Focus chain R [auth D] Focus chain S [auth E] Focus chain T [auth E] Focus chain V [auth F] Interactions & Density Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth B] Focus chain K [auth B] Focus chain L [auth C] Focus chain M [auth C] Focus chain P [auth D] Focus chain Q [auth D] Focus chain R [auth D] Focus chain S [auth E] Focus chain T [auth E] Focus chain V [auth F]
EDO Query on EDO Download:Ideal Coordinates CCD File SDF format, chain W [auth F] SDF format, chain U [auth E] SDF format, chain O [auth C] SDF format, chain N [auth C] MOL2 format, chain W [auth F] MOL2 format, chain U [auth E] MOL2 format, chain O [auth C] MOL2 format, chain N [auth C] mmCIF format, chain W [auth F] mmCIF format, chain U [auth E] mmCIF format, chain O [auth C] mmCIF format, chain N [auth C]	N [auth C], O [auth C], U [auth E], W [auth F]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain N [auth C] Focus chain O [auth C] Focus chain U [auth E] Focus chain W [auth F] Interactions & Density Focus chain N [auth C] Focus chain O [auth C] Focus chain U [auth E] Focus chain W [auth F]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.11 Å
R-Value Free: 0.259 (Depositor), 0.259 (DCC)
R-Value Work: 0.213 (Depositor), 0.213 (DCC)
R-Value Observed: 0.215 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.216	α = 90
b = 92.47	β = 90
c = 160.387	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHASER	phasing
PDB_EXTRACT	data extraction
XDS	data reduction
Aimless	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-03-11

Deposition Author(s):

Funding Organization	Location	Grant Number
Other private	Germany	--

Revision History (Full details and data files)

Version 1.0: 2026-03-11
Type: Initial release
Version 1.1: 2026-04-22
Changes: Database references, Source and taxonomy, Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.