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 28OO | pdb_000028oo

Cryo-EM structure of the RESC1-RESC2 complex bound to KREH2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history. 

Literature

The RNA helicase KREH2 directly binds the RESC1-RESC2 complex in trypanosomatid mitochondrial RNA editing.

Yelmar, R., Dolce, L.G., Tengo, L., Gabiatti, B.P., Corwin, J., O'Hara, L., Goode, C., Sharma, S.K., Rodshagen, T., Goodall, Z., Cruz-Reyes, J., McDermott, S.M., Kowalinski, E.

(2026) bioRxiv 

  • DOI: https://doi.org/10.64898/2026.10.02.754006
  • Primary Citation Related Structures: 
    28OO

  • PubMed Abstract: 

    Trypanosomatids are medically important single-celled eukaryotic protists with exceptional RNA biology. They display highly unusual RNA biogenesis pathways, notably mitochondrial RNA editing, an essential post-transcriptional process transforming cryptic primary transcripts into functional mRNAs. Large multiprotein assemblies coordinate the RNA editing process, in which small guide RNAs (gRNAs) anneal to the pre-mRNAs and serve as templates for uridine insertion or deletion. Kinetoplast RNA Editing Helicases (KREHs) are important components of the RNA editing process that modifies large portions of pre-mRNA via the sequential annealing and dissociation of multiple gRNAs. However, how KREH helicases interact with components of the editing machinery, and which subunits mediate these interactions, remain unresolved. Here, we examined an association between the DEAH/RHA RNA helicase KREH2 and the RESC1-RESC2 protein heterodimer using proximity labeling and co-immunoprecipitation coupled to quantitative mass spectrometry in vivo . We reconstituted a minimal trimeric KREH2 peptide-RESC1-RESC2 complex in vitro and characterized novel direct binding of a KREH2 peptide to RESC1 using cryo-electron microscopy. These results establish a mechanistic link between the RNA helicase KREH2 and the RESC1-RESC2 module at the 5'-end of gRNAs, providing new avenues for studying the orchestration of RNA remodeling in trypanosomatid mitochondrial RNA editing.


  • Organizational Affiliation: 
    • EMBL Grenoble, 71 Avenue des Martyrs, 38000 Grenoble, France.

Macromolecule Content 

  • Total Structure Weight: 107.2 kDa 
  • Atom Count: 5,253 
  • Modeled Residue Count: 661 
  • Deposited Residue Count: 956 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
RESC1/2 CYTH-like domain-containing protein475Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb07.22O10.680, Tb927.7.2570
UniProt
Find proteins for Q57XL7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Explore Q57XL7 
Go to UniProtKB:  Q57XL7
Entity Groups
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UniProt GroupQ57XL7
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
RESC1/2 CYTH-like domain-containing protein461Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: 28H13.250, Tb927.2.3800
UniProt
Find proteins for Q586X1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Explore Q586X1 
Go to UniProtKB:  Q586X1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ586X1
Sequence Annotations
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Reference Sequence
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
RNA editing associated helicase 220Trypanosoma brucei bruceiMutation(s): 0 
EC: 3.6.4.13
UniProt
Find proteins for Q581T1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Explore Q581T1 
Go to UniProtKB:  Q581T1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ581T1
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-20-CE11-0016

Revision History  (Full details and data files)

  • Version 1.0: 2026-11-04
    Type: Initial release