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 28OA | pdb_000028oa

Closed state Escherichia coli MscL mechanosensitive channel in DMPC nanodiscs


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history. 

Literature

Structural basis of the gating mechanism of the large-conductance mechanosensitive channel from Escherichia coli.

Hardman, K., Wort, J.L., Waheed, Q., Liu, X., Arul, D., Porav, S.A., Calabrese, A.N., Muench, S.P., Pliotas, C.

(2026) Nat Commun 17

  • DOI: https://doi.org/10.1038/s41467-026-76193-0
  • Primary Citation Related Structures: 
    28OA, 28OB, 28OC

  • PubMed Abstract: 

    The mechanosensitive channel of large conductance (MscL) is a tension-gated, pore-forming protein that acts as a safety valve to protect bacteria from osmotic lysis. Escherichia coli MscL (EcMscL) was the first mechanosensitive channel discovered and subsequently served as a model system for understanding mechanical sensing, becoming one of the most decorated and well-studied systems. Despite extensive biophysical and functional characterisation spanning several decades, the precise mechanism of EcMscL gating has been poorly understood due to the lack of high-resolution structural information. Herein, we solve two EcMscL structures by cryoEM in the closed conformation in DMPC and DOPC lipid nanodiscs. Using PELDOR/DEER spectroscopy, we screen conditions and identify that in DSPC lipids, the EcMscL conformational ensemble shifts away from the closed state and that open-like states are present. We solve the structure in an expanded state by cryoEM, revealing an architecture with pore properties consistent with previous electrophysiology reports. By combining hydrogen-deuterium exchange mass spectrometry and molecular dynamics simulations, we investigate the dynamics of EcMscL gating in lipid bilayers, identifying sites involved in the closed-to-expanded transition. Combined, this enables us to inform on the elusive structural mechanism of EcMscL mechanosensitive channel function.


  • Organizational Affiliation: 
    • Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, UK.

Macromolecule Content 

  • Total Structure Weight: 79.01 kDa 
  • Atom Count: 5,130 
  • Modeled Residue Count: 660 
  • Deposited Residue Count: 710 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Large-conductance mechanosensitive channelA,
B [auth C],
C [auth D],
D [auth E],
E [auth B]
142Escherichia coliMutation(s): 0 
Gene Names: mscL, yhdC, b3291, JW3252
UniProt
Find proteins for P0A742 (Escherichia coli (strain K12))
Explore P0A742 
Go to UniProtKB:  P0A742
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A742
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.17.1_3660
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/S018069/1

Revision History  (Full details and data files)

  • Version 1.0: 2026-08-12
    Type: Initial release
  • Version 1.1: 2026-10-28
    Changes: Data collection, Database references