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 27VF | pdb_000027vf

smKCS6-smCER2 complex carrying the V434N mutation in smKCS6


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.54 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 27VF

This is version 1.0 of the entry. See complete history. 

Literature

Structural snapshots of plant-specific KCS6-CER2 complex reveal the elongation mechanism of very-long-chain fatty acids.

Wang, Y., Wang, H., Yang, X., Qin, Y., Xu, R., Liu, T., Shi, C., Zhang, H., Zhong, L., Qu, X., Zhu, F., Deng, X., Xu, Y., Wang, Q., Cheng, Y.

(2026) Mol Plant 

  • DOI: https://doi.org/10.1016/j.molp.2026.07.007
  • Primary Citation Related Structures: 
    27VE, 27VF, 27VG, 27VH, 27VI

  • PubMed Abstract: 

    Very-long-chain fatty acids (VLCFAs) are essential building blocks for sphingolipids, phospholipids, triacylglycerols, suberin, and cuticular waxes, all of which play crucial roles in plant development and environmental adaptation. The elongation of VLCFAs is governed by plant-specific β-ketoacyl-CoA synthases (KCSs) and ECERIFERUM2 (CER2) family proteins. However, the structural catalytic mechanisms underlying VLCFA elongation remain poorly understood. Here, we present structural snapshots of the KCS6-CER2 complex from the evolutionarily representative vascular plant Selaginella moellendorffii in multiple elongation reaction states. These structures delineate how the acyl chain of the substrate C22:0 acyl-CoA (behenoyl-CoA), the two-carbon donor malonyl-CoA, and the product C24:0 β-ketoacyl-CoA (3-oxo-lignoceroyl-CoA) sequentially engage the substrate binding channel of the KCS6-CER2 complex on the cytosolic side of the endoplasmic reticulum membrane. We further identify a previously unrecognized side channel that accommodates an additional acyl-CoA molecule, indicating an unexpected structural feature for VLCFA biosynthesis. In addition, structural and biochemical analyses of the KCS6-CER2 complex reveal that CER2 acts as a structural cofactor, extending the hydrophobic substrate binding channel of KCS6. Together, these findings uncover the molecular mechanism by which KCS6 and CER2 collaborate to drive chain-length-specific VLCFA elongation and provide a structural framework for understanding and engineering VLCFA elongation across the plant kingdom.


  • Organizational Affiliation: 
    • National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan 430070, China; Institute of Drug Discovery, China-New Zealand Joint Laboratory on Biomedicine and Health, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou 510530, China.

Macromolecule Content 

  • Total Structure Weight: 215.42 kDa 
  • Atom Count: 12,118 
  • Modeled Residue Count: 1,553 
  • Deposited Residue Count: 1,946 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
3-ketoacyl-CoA synthaseA [auth C],
C [auth A]
534Selaginella moellendorffiiMutation(s): 1 
Gene Names: SELMODRAFT_79947
EC: 2.3.1
UniProt
Find proteins for D8QXX0 (Selaginella moellendorffii)
Explore D8QXX0 
Go to UniProtKB:  D8QXX0
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD8QXX0
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
BAHD family acyltransferase, clade VB [auth D],
D [auth B]
439Selaginella moellendorffiiMutation(s): 0 
Gene Names: SELMODRAFT_441723
UniProt
Find proteins for D8RLA0 (Selaginella moellendorffii)
Explore D8RLA0 
Go to UniProtKB:  D8RLA0
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD8RLA0
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.54 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2026-11-04
    Type: Initial release