22BV | pdb_000022bv

Cryo-EM structure of A-H(M) complex (two ADP)

PDB DOI: https://doi.org/10.2210/pdb22BV/pdb
EM Map EMD-68159: EMDB EMDataResource

Classification: IMMUNE SYSTEM
Organism(s): Ligilactobacillus acidipiscis
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2026-01-06 Released: 2026-07-29
Deposition Author(s): Lin, Z., Guo, M., Zhu, Y., Huang, Z.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 22BV

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of A-H(M) complex (two ADP)

Lin, Z., Guo, M., Zhu, Y., Huang, Z.

To be published.

Macromolecule Content

Total Structure Weight: 151.76 kDa
Atom Count: 9,839
Modeled Residue Count: 1,213
Deposited Residue Count: 1,317
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AAA family ATPase	A [auth B], B [auth C]	551	Ligilactobacillus acidipiscis	Mutation(s): 0 Gene Names: K8V00_08745
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
TIGR02646 family protein	C [auth F]	215	Ligilactobacillus acidipiscis	Mutation(s): 0 Gene Names: K8V00_08750
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ADP (Subject of Investigation/LOI) Query on ADP Download:Ideal Coordinates CCD File SDF format, chain D [auth B] SDF format, chain E [auth C] MOL2 format, chain D [auth B] MOL2 format, chain E [auth C] mmCIF format, chain D [auth B] mmCIF format, chain E [auth C]	D [auth B], E [auth C]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain D [auth B] Focus chain E [auth C] Interactions & Density Focus chain D [auth B] Focus chain E [auth C]
ZN (Subject of Investigation/LOI) Query on ZN Download:Ideal Coordinates CCD File SDF format, chain F MOL2 format, chain F mmCIF format, chain F	F	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain F Interactions & Density Focus chain F

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487:
RECONSTRUCTION	cryoSPARC

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-07-29

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2026-07-29
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.