The structure of gene product APE0525 from Aeropyrum pernix
Cuff, M.E., Skarina, T., Edwards, A., Savchenko, A., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
hypothetical protein APE0525 | 190 | Aeropyrum pernix K1 | Mutation(s): 3  Gene Names: APE0525 | ||
UniProt | |||||
Find proteins for Q9YEQ6 (Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)) Explore Q9YEQ6  Go to UniProtKB:  Q9YEQ6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9YEQ6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | B [auth A], C [auth A], D [auth A], E [auth A], F [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
K Query on K | G [auth A] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 48.85 | α = 90 |
b = 112.792 | β = 90 |
c = 39.001 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
SBC-Collect | data collection |
HKL-2000 | data scaling |
HKL-3000 | phasing |
SHELXD | phasing |
SHELXE | model building |
MLPHARE | phasing |
DM | phasing |
SOLVE | phasing |
RESOLVE | phasing |
O | model building |
Coot | model building |
CCP4 | phasing |
ARP/wARP | model building |