1Z9Z | pdb_00001z9z

Crystal structure of yeast sla1 SH3 domain 3

PDB DOI: https://doi.org/10.2210/pdb1Z9Z/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Saccharomyces cerevisiae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2005-04-05 Released: 2006-04-25
Deposition Author(s): Kursula, P., Kursula, I., Salmazo, A.P.T., Zou, P., Song, Y.H., Lehmann, F., Wilmanns, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free:
0.229 (Depositor), 0.249 (DCC)
R-Value Work:
0.178 (Depositor)
R-Value Observed:
0.180 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history.

Literature

Yeast SH3 domain three-dimensional proteome

Kursula, P., Kursula, I., Salmazo, A.P.T., Zou, P., Song, Y.H., Lehmann, F., Wilmanns, M.

To be published.

Macromolecule Content

Total Structure Weight: 13.76 kDa
Atom Count: 1,173
Modeled Residue Count: 120
Deposited Residue Count: 120
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytoskeleton assembly control protein SLA1	A, B	60	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: SLA1
UniProt
Find proteins for P32790 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32790 Go to UniProtKB: P32790
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P32790
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free: 0.229 (Depositor), 0.249 (DCC)
R-Value Work: 0.178 (Depositor)
R-Value Observed: 0.180 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.99	α = 90
b = 83.99	β = 90
c = 50.14	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MAR345	data collection
XDS	data scaling
AMoRE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-04-25

Deposition Author(s):

Salmazo, A.P.T.

Revision History (Full details and data files)

Version 1.0: 2006-04-25
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.3: 2017-10-11
Changes: Refinement description
Version 1.4: 2024-02-14
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.