1Z6L | pdb_00001z6l

crystal structure of Fms1 in complex with its substrate

• PDB DOI: https://doi.org/10.2210/pdb1Z6L/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Saccharomyces cerevisiae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2005-03-22 Released: 2005-09-27 
• Deposition Author(s): Huang, Q., Liu, Q., Hao, Q.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.300 (Depositor), 0.238 (DCC) 
• R-Value Work: 
  0.237 (Depositor), 0.233 (DCC) 
• R-Value Observed: 
  0.300 (Depositor) 

Starting Model: experimental

Literature

crystal structure of Fms1 in complex with its substrate

Huang, Q., Liu, Q., Hao, Q.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 119.89 kDa 
• Atom Count: 8,052 
• Modeled Residue Count: 972 
• Deposited Residue Count: 1,032 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Polyamine oxidase FMS1	A, B	516	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: FMS1 EC: 1.5.3.11 (PDB Primary Data), 1.5.3.17 (UniProt)
UniProt
Find proteins for P50264 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P50264  Go to UniProtKB:  P50264

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FAD	C [auth A], E [auth B]	FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N
DRE	D [auth A], F [auth B]	N-(6-AMINOHEXYL)HEXANE-1,6-DIAMINE C12 H29 N3 MRNZSTMRDWRNNR-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.300 (Depositor), 0.238 (DCC) 
• R-Value Work:  0.237 (Depositor), 0.233 (DCC) 
• R-Value Observed: 0.300 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 102.038	α = 90
b = 214.616	β = 90
c = 118.797	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
CNS	refinement
HKL-2000	data reduction
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-09-27 
Deposition Author(s): Huang, Q., Liu, Q., Hao, Q.

Revision History  

• Version 1.0: 2005-09-27
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-04-03
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.4: 2024-11-20
  Changes: Structure summary