1Z64 | pdb_00001z64

NMR Solution Structure of Pleurocidin in DPC Micelles


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 11 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

Validation slider image for 1Z64

This is version 1.4 of the entry. See complete history

Literature

Structural characterization of the antimicrobial peptide pleurocidin from winter flounder.

Syvitski, R.T.Burton, I.Mattatall, N.R.Douglas, S.E.Jakeman, D.L.

(2005) Biochemistry 44: 7282-7293

  • DOI: https://doi.org/10.1021/bi0504005
  • Primary Citation Related Structures: 
    1Z64

  • PubMed Abstract: 

    Pleurocidin is an antimicrobial peptide that was isolated from the mucus membranes of winter flounder (Pseudopleuronectes americanus) and contributes to the initial stages of defense against bacterial infection. From NMR structural studies with the uniformly (15)N-labeled peptide, a structure of pleurocidin was determined to be in a random coil conformation in aqueous solution whereas it assumes an alpha-helical structure in TFE and in dodecylphosphocholine (DPC) micelles. From (15)N relaxation studies, the helix is a rigid structure in the membrane-mimicking environment. Strong NOESY cross-peaks from the pleurocidin to the aliphatic chain on DPC confirm that pleurocidin is contained within the DPC micelle and not associated with the surface of the micelle. From diffusion studies it was determined that each micelle contains at least two pleurocidin molecules.


  • Organizational Affiliation
    • College of Pharmacy, 5968 College Street, Dalhousie University, Halifax, Nova Scotia, Canada B3H 3J5.

Macromolecule Content 

  • Total Structure Weight: 2.72 kDa 
  • Atom Count: 194 
  • Modeled Residue Count: 26 
  • Deposited Residue Count: 26 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Pleruocidin26Pseudopleuronectes americanusMutation(s): 1 
Membrane Entity: Yes 
UniProt
Find proteins for P81941 (Pseudopleuronectes americanus)
Explore P81941 
Go to UniProtKB:  P81941
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP81941
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 11 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-04-12
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-03-02
    Changes: Data collection, Database references, Derived calculations
  • Version 1.4: 2024-11-06
    Changes: Data collection, Structure summary