1YZG | pdb_00001yzg

Structure of Human ADP-ribosylation factor-like 8

• PDB DOI: https://doi.org/10.2210/pdb1YZG/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2005-02-28 Released: 2005-03-22 
• Deposition Author(s): Choe, J., Atanassova, A., Arrowsmith, C., Edwards, A., Sundstrom, M., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.270 (Depositor) 
• R-Value Work: 
  0.226 (Depositor), 0.234 (DCC) 
• R-Value Observed: 
  0.226 (Depositor) 

Starting Model: experimental

Literature

Structure of Human ADP-ribosylation factor-like 8

Atanassova, A., Choe, J., Arrowsmith, C., Edwards, A., Sundstrom, M., Bochkarev, A., Park, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 20.84 kDa 
• Atom Count: 1,489 
• Modeled Residue Count: 168 
• Deposited Residue Count: 179 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ADP-ribosylation factor-like 8	A	179	Homo sapiens	Mutation(s): 0  Gene Names: ARL8
UniProt & NIH Common Fund Data Resources
Find proteins for Q96KC2 (Homo sapiens) Explore Q96KC2  Go to UniProtKB:  Q96KC2
PHAROS:  Q96KC2 GTEx:  ENSG00000165997

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GDP	B [auth A]	GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.270 (Depositor) 
• R-Value Work:  0.226 (Depositor), 0.234 (DCC) 
• R-Value Observed: 0.226 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.725	α = 90
b = 48.137	β = 103.45
c = 51.371	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
CrystalClear	data reduction
AMoRE	phasing
REFMAC	refinement
CrystalClear	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-03-22 
Deposition Author(s): Choe, J., Atanassova, A., Arrowsmith, C., Edwards, A., Sundstrom, M., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2005-03-22
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2018-07-18
  Changes: Data collection, Database references
• Version 1.4: 2023-08-23
  Changes: Data collection, Database references, Derived calculations, Refinement description