A simple protocol to estimate differences in protein binding affinity for enantiomers without prior resolution of racemates
Fokkens, J., Klebe, G.(2006) Angew Chem Int Ed Engl 45: 985-989
Experimental Data Snapshot
(2006) Angew Chem Int Ed Engl 45: 985-989
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Thrombin light chain | A [auth L] | 27 | Homo sapiens | Mutation(s): 0  EC: 3.4.21.5 | ![]() |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00734 (Homo sapiens) Explore P00734  Go to UniProtKB:  P00734 | |||||
PHAROS:  P00734 GTEx:  ENSG00000180210  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00734 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Thrombin heavy chain | B [auth H] | 257 | Homo sapiens | Mutation(s): 0  EC: 3.4.21.5 | ![]() |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00734 (Homo sapiens) Explore P00734  Go to UniProtKB:  P00734 | |||||
PHAROS:  P00734 GTEx:  ENSG00000180210  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00734 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Hirudin | C [auth I] | 10 | Hirudo medicinalis | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P01050 (Hirudo medicinalis) Explore P01050  Go to UniProtKB:  P01050 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01050 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
UIP Query on UIP | F [auth H] | (1R,3AS,4R,8AS,8BR)-4-(2-BENZO[1,3]DIOXOL-5-YLMETHYL-1-ETHYL-3-OXO-DECAHYDRO-PYRROLO[3,4-A]PYRROLIZIN-4-YL)-BENZAMIDINE C26 H30 N4 O3 RCAUWWFTOCHSJH-KEXZDOINSA-N | |||
GOL Query on GOL | G [auth H], H, I [auth H] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
NA Query on NA | D [auth H], E [auth H] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
TYS Query on TYS | C [auth I] | L-PEPTIDE LINKING | C9 H11 N O6 S | TYR |
Length ( Å ) | Angle ( ˚ ) |
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a = 71.1 | α = 90 |
b = 71.4 | β = 100.6 |
c = 72.4 | γ = 90 |
Software Name | Purpose |
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SHELX | model building |
SHELXL-97 | refinement |
SCALEPACK | data scaling |
CNS | phasing |