1XNC | pdb_00001xnc

THERMOSTABILIZATION OF THE BACILLUS CIRCULANS XYLANASE, BY THE INTRODUCTION OF DISULFIDE BONDS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Work: 
    0.171 (Depositor) 
  • R-Value Observed: 
    0.171 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Thermostabilization of the Bacillus circulans xylanase by the introduction of disulfide bonds.

Wakarchuk, W.W.Sung, W.L.Campbell, R.L.Cunningham, A.Watson, D.C.Yaguchi, M.

(1994) Protein Eng 7: 1379-1386

  • DOI: https://doi.org/10.1093/protein/7.11.1379
  • Primary Citation Related Structures: 
    1XNC

  • PubMed Abstract: 

    The thermostability of the 20 396 Da Bacillus circulans xylanase was increased by the introduction of both intra- and intermolecular disulfide bridges by site-directed mutagenesis. Based on the 3-D structure of the enzyme, sites were chosen where favourable geometry for a bridge existed; in one case, to obtain favourable geometry additional mutations around the cysteine sites were designed by computer modelling. The disulfide bonds introduced into the xylanase were mostly buried and, in the absence of protein denaturants, relatively insensitive to reduction by dithiothreitol. The mutant proteins were examined for residual enzymatic activity after various thermal treatments, and were assayed for enzymatic activity at elevated temperatures to assess their productivity. We have examined one of these mutants by X-ray crystallography. All of the disulfide bond designs tested increased the thermostability of the B. circulans xylanase, but not all enhanced the activity of the enzyme at elevated temperatures.


  • Organizational Affiliation
    • Institute for Biological Sciences, National Research Council of Canada, Ottawa, Ontario.

Macromolecule Content 

  • Total Structure Weight: 20.41 kDa 
  • Atom Count: 1,598 
  • Modeled Residue Count: 185 
  • Deposited Residue Count: 185 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
XYLANASE185Niallia circulansMutation(s): 0 
EC: 3.2.1.8
UniProt
Find proteins for P09850 (Niallia circulans)
Explore P09850 
Go to UniProtKB:  P09850
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09850
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Work:  0.171 (Depositor) 
  • R-Value Observed: 0.171 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.9α = 90
b = 52.88β = 90
c = 78.43γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1994-12-20
    Type: Initial release
  • Version 1.1: 2008-03-03
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-11-29
    Changes: Derived calculations, Other
  • Version 1.4: 2024-10-23
    Changes: Data collection, Database references, Structure summary