1XI8 | pdb_00001xi8

Molybdenum cofactor biosynthesis protein from Pyrococcus furiosus Pfu-1657500-001

PDB DOI: https://doi.org/10.2210/pdb1XI8/pdb

Classification: Structural genomics, unknown function
Organism(s): Pyrococcus furiosus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2004-09-21 Released: 2004-11-30
Deposition Author(s): Zhou, W., Zhao, M., Chang, J.C., Liu, Z.-J., Chen, L., Horanyi, P., Xu, H., Yang, H., Habel, J.E., Lee, D., Chang, S.-H., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.343 (Depositor), 0.341 (DCC)
R-Value Work:
0.306 (Depositor), 0.304 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Molybdenum cofactor biosynthesis protein from Pyrococcus furiosus Pfu-1657500-001

Zhou, W., Zhao, M., Chang, J.C., Liu, Z.-J., Chen, L., Horanyi, P., Xu, H., Yang, H., Habel, J.E., Lee, D., Chang, S.-H., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics

To be published.

Macromolecule Content

Total Structure Weight: 89.6 kDa
Atom Count: 4,034
Modeled Residue Count: 534
Deposited Residue Count: 806
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Molybdenum cofactor biosynthesis protein	A, B	403	Pyrococcus furiosus	Mutation(s): 0
UniProt
Find proteins for Q8U034 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore Q8U034 Go to UniProtKB: Q8U034
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8U034
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.343 (Depositor), 0.341 (DCC)
R-Value Work: 0.306 (Depositor), 0.304 (DCC)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.547	α = 90
b = 116.599	β = 90
c = 147.226	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
AMoRE	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2004-11-30

Deposition Author(s):

Southeast Collaboratory for Structural Genomics (SECSG)

Revision History (Full details and data files)

Version 1.0: 2004-11-30
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-11
Changes: Refinement description
Version 1.4: 2023-10-25
Changes: Data collection, Database references, Refinement description