1X94 | pdb_00001x94

Crystal Structure of a Hypothetical protein

PDB DOI: https://doi.org/10.2210/pdb1X94/pdb

Classification: ISOMERASE
Organism(s): Vibrio cholerae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2004-08-19 Released: 2004-09-14
Deposition Author(s): Seetharaman, J., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.285 (Depositor), 0.291 (DCC)
R-Value Work:
0.229 (Depositor), 0.230 (DCC)
R-Value Observed:
0.229 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1X94

This is version 1.4 of the entry. See complete history.

Literature

Crystal structures of two putative phosphoheptose isomerases.

Seetharaman, J., Rajashankar, K.R., Solorzano, V., Kniewel, R., Lima, C.D., Bonanno, J.B., Burley, S.K., Swaminathan, S.

(2006) Proteins 63: 1092-1096

PubMed: 16477602 Search on PubMed Search on PubMed Central
DOI: https://doi.org/10.1002/prot.20908
Primary Citation Related Structures:
1TK9, 1X94

Organizational Affiliation

Biology Department, Brookhaven National Laboratory, Upton, New York 11973, USA.

Macromolecule Content

Total Structure Weight: 41.35 kDa
Atom Count: 2,742
Modeled Residue Count: 352
Deposited Residue Count: 382
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
putative Phosphoheptose isomerase	A, B	191	Vibrio cholerae	Mutation(s): 0 Gene Names: lpcA, gmhA EC: 5.3.1.28
UniProt
Find proteins for Q9KPY2 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KPY2 Go to UniProtKB: Q9KPY2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9KPY2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.285 (Depositor), 0.291 (DCC)
R-Value Work: 0.229 (Depositor), 0.230 (DCC)
R-Value Observed: 0.229 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 134.279	α = 90
b = 46.112	β = 90
c = 60.35	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
CBASS	data collection
HKL-2000	data scaling
SOLVE	phasing
SHARP	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2004-09-14

Deposition Author(s):

Seetharaman, J.

Swaminathan, S.

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2004-09-14
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2021-02-03
Changes: Database references, Structure summary
Version 1.4: 2024-02-14
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.