1X0U | pdb_00001x0u

Crystal Structure of the carboxyl transferase subunit of putative PCC of Sulfolobus tokodaii

PDB DOI: https://doi.org/10.2210/pdb1X0U/pdb

Classification: LYASE
Organism(s): Sulfurisphaera tokodaii str. 7
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2005-03-29 Released: 2006-07-04
Deposition Author(s): Kakuta, Y., Sueda, S., Kondo, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.271 (Depositor), 0.270 (DCC)
R-Value Work:
0.228 (Depositor), 0.227 (DCC)
R-Value Observed:
0.229 (Depositor)

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This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of the carboxyl transferase subunit of putative PCC of Sulfolobus tokodaii

Kakuta, Y., Sueda, S., Kondo, H.

To be published.

Macromolecule Content

Total Structure Weight: 343.74 kDa
Atom Count: 25,335
Modeled Residue Count: 3,108
Deposited Residue Count: 3,132
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical methylmalonyl-CoA decarboxylase alpha subunit	A, B, C, D, E A, B, C, D, E, F	522	Sulfurisphaera tokodaii str. 7	Mutation(s): 0 EC: 6.4.1.2 (UniProt), 6.4.1.3 (UniProt)
UniProt
Find proteins for F9VN45 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore F9VN45 Go to UniProtKB: F9VN45
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	F9VN45
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.271 (Depositor), 0.270 (DCC)
R-Value Work: 0.228 (Depositor), 0.227 (DCC)
R-Value Observed: 0.229 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 99.61	α = 90
b = 181.471	β = 116.21
c = 112.7	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
MOLREP	phasing
CNS	refinement
HKL-2000	data reduction

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-07-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2006-07-04
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.3: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.