1WZV

Crystal Structure of UbcH8

• PDB DOI: https://doi.org/10.2210/pdb1WZV/pdb

• Classification: LIGASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2005-03-10 Released: 2005-03-22 
• Deposition Author(s): Mizushima, T., Suzuki, M., Teshima, N., Yamane, T., Murata, S., Tanaka, K.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.267 
• R-Value Work: 0.207 
• R-Value Observed: 0.210 

Starting Model: experimental

Literature

Crystal Structure of UbcH8

Mizushima, T., Suzuki, M., Teshima, N., Yamane, T., Murata, S., Tanaka, K.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 35.88 kDa 
• Atom Count: 2,592 
• Modelled Residue Count: 300 
• Deposited Residue Count: 310 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-conjugating enzyme E2 L6	A, B	155	Homo sapiens	Mutation(s): 0  EC: 6.3.2.19 (PDB Primary Data), 2.3.2.23 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for O14933 (Homo sapiens) Explore O14933  Go to UniProtKB:  O14933
PHAROS:  O14933 GTEx:  ENSG00000156587

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.267 
• R-Value Work: 0.207 
• R-Value Observed: 0.210 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.231	α = 90
b = 35.486	β = 104.55
c = 92.58	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-03-22 
Deposition Author(s): Mizushima, T., Suzuki, M., Teshima, N., Yamane, T., Murata, S., Tanaka, K.

Revision History  

• Version 1.0: 2005-03-22
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-10-25
  Changes: Data collection, Database references, Refinement description