Download MendeleyCrystal Structure of 5'-Deoxy-5'-methylthioadenosine from Aeropyrum pernix (R32 form)
Tsunoda, M., Murakami, Y., Nakamura, K.T.To be published.
1WTA
Crystal Structure of 5'-Deoxy-5'-methylthioadenosine from Aeropyrum pernix (R32 form)
- PDB DOI: https://doi.org/10.2210/pdb1WTA/pdb
- Classification: TRANSFERASE
- Organism(s): Aeropyrum pernix K1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-11-18 Released: 2006-02-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.78 Å
- R-Value Free: 0.196
- R-Value Work: 0.164
- R-Value Observed: 0.166
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 5'-methylthioadenosine phosphorylase | 275 | Aeropyrum pernix K1 | Mutation(s): 0 EC: 2.4.2.28 |  | |
UniProt | |||||
Find proteins for Q9YAQ8 (Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)) Explore Q9YAQ8 Go to UniProtKB: Q9YAQ8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9YAQ8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ADE Query on ADE | C [auth A] | ADENINE C5 H5 N5 GFFGJBXGBJISGV-UHFFFAOYSA-N |  | ||
| PO4 Query on PO4 | B [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.78 Å
- R-Value Free: 0.196
- R-Value Work: 0.164
- R-Value Observed: 0.166
- Space Group: H 3 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.15 | α = 90 |
| b = 78.15 | β = 90 |
| c = 230.43 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2006-02-07 Deposition Author(s): Tsunoda, M., Murakami, Y., Nakamura, K.T.
Revision History (Full details and data files)
- Version 1.0: 2006-02-07
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.3: 2017-10-11
Changes: Advisory, Refinement description - Version 1.4: 2017-11-01
Changes: Derived calculations
