1WGY | pdb_00001wgy

RA domain of guanine nucleotide exchange factor for Rap1

PDB DOI: https://doi.org/10.2210/pdb1WGY/pdb
BMRB: 10086

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2004-05-28 Released: 2004-11-28
Deposition Author(s): Nagashima, T., Tochio, N., Kigawa, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, target function

wwPDB Validation 3D Report Full Report

Validation slider image for 1WGY

This is version 1.4 of the entry. See complete history.

Literature

RA domain of guanine nucleotide exchange factor for Rap1

Nagashima, T., Tochio, N., Kigawa, T., Hayashi, F., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 11.26 kDa
Atom Count: 792
Modeled Residue Count: 104
Deposited Residue Count: 104
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Rap guanine nucleotide exchange factor 5	A	104	Homo sapiens	Mutation(s): 0 Gene Names: Kazusa cDNA ha06833
UniProt & NIH Common Fund Data Resources
Find proteins for Q92565 (Homo sapiens) Explore Q92565 Go to UniProtKB: Q92565
PHAROS: Q92565 GTEx: ENSG00000136237
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q92565
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2004-11-28

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2004-11-28
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-02
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.