1WGB | pdb_00001wgb

Crystal structure of a probable flavoprotein from Thermus thermophilus HB8

• PDB DOI: https://doi.org/10.2210/pdb1WGB/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Thermus thermophilus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-05-28 Released: 2004-11-28 
• Deposition Author(s): Imagawa, T., Tsuge, H., Utsunomiya, H., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.241 (Depositor), 0.242 (DCC) 
• R-Value Work: 
  0.211 (Depositor), 0.212 (DCC) 
• R-Value Observed: 
  0.211 (Depositor) 

Literature

Crystal structure of a probable flavoprotein from Thermus thermophilus HB8

Imagawa, T., Tsuge, H., Utsunomiya, H., Yokoyama, S., Kuramitsu, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 17.89 kDa 
• Atom Count: 1,384 
• Modeled Residue Count: 159 
• Deposited Residue Count: 159 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
probable flavoprotein	A	159	Thermus thermophilus	Mutation(s): 0  EC: 1.14.13
UniProt
Find proteins for Q72LK7 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)) Explore Q72LK7  Go to UniProtKB:  Q72LK7

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.241 (Depositor), 0.242 (DCC) 
• R-Value Work:  0.211 (Depositor), 0.212 (DCC) 
• R-Value Observed: 0.211 (Depositor) 

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.78	α = 90
b = 63.78	β = 90
c = 80.47	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
CrystalClear	data reduction
SOLVE	phasing
CNS	refinement
CrystalClear	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-11-28 
Deposition Author(s): Imagawa, T., Tsuge, H., Utsunomiya, H., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2004-11-28
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2024-10-16
  Changes: Data collection, Database references, Derived calculations, Structure summary