1WC2 | pdb_00001wc2

Beta-1,4-D-endoglucanase Cel45A from blue mussel Mytilus edulis at 1.2A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free: 
    0.162 (Depositor) 
  • R-Value Work: 
    0.147 (Depositor), 0.157 (DCC) 
  • R-Value Observed: 
    0.147 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Glucomannan and beta-glucan degradation by Mytilus edulis Cel45A: Crystal structure and activity comparison with GH45 subfamily A, B and C.

Okmane, L.Nestor, G.Jakobsson, E.Xu, B.Igarashi, K.Sandgren, M.Kleywegt, G.J.Stahlberg, J.

(2022) Carbohydr Polym 277: 118771-118771

  • DOI: https://doi.org/10.1016/j.carbpol.2021.118771
  • Primary Citation Related Structures: 
    1WC2

  • PubMed Abstract: 

    The enzymatic hydrolysis of barley beta-glucan, konjac glucomannan and carboxymethyl cellulose by a β-1,4-D-endoglucanase MeCel45A from blue mussel, Mytilus edulis, which belongs to subfamily B of glycoside hydrolase family 45 (GH45), was compared with GH45 members of subfamilies A (Humicola insolens HiCel45A), B (Trichoderma reesei TrCel45A) and C (Phanerochaete chrysosporium PcCel45A). Furthermore, the crystal structure of MeCel45A is reported. Initial rates and hydrolysis yields were determined by reducing sugar assays and product formation was characterized using NMR spectroscopy. The subfamily B and C enzymes exhibited mannanase activity, whereas the subfamily A member was uniquely able to produce monomeric glucose. All enzymes were confirmed to be inverting glycoside hydrolases. MeCel45A appears to be cold adapted by evolution, as it maintained 70% activity on cellohexaose at 4 °C relative to 30 °C, compared to 35% for TrCel45A. Both enzymes produced cellobiose and cellotetraose from cellohexaose, but TrCel45A additionally produced cellotriose.


  • Organizational Affiliation
    • Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala, Sweden.

Macromolecule Content 

  • Total Structure Weight: 20 kDa 
  • Atom Count: 1,742 
  • Modeled Residue Count: 180 
  • Deposited Residue Count: 181 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ENDOGLUCANASE181Mytilus edulisMutation(s): 0 
EC: 3.2.1.4
UniProt
Find proteins for P82186 (Mytilus edulis)
Explore P82186 
Go to UniProtKB:  P82186
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP82186
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free:  0.162 (Depositor) 
  • R-Value Work:  0.147 (Depositor), 0.157 (DCC) 
  • R-Value Observed: 0.147 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 45.47α = 90
b = 52.407β = 90
c = 80.289γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHARPphasing
SOLOMONphasing
REFMACrefinement

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-05-24
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2021-12-29
    Changes: Database references, Other
  • Version 1.4: 2024-10-23
    Changes: Data collection, Structure summary