1W7R | pdb_00001w7r

Feglymycin P64 crystal form

PDB DOI: https://doi.org/10.2210/pdb1W7R/pdb

Classification: ANTIBIOTIC
Organism(s): Streptomyces sp.
Mutation(s): No

Deposited: 2004-09-08 Released: 2005-03-08
Deposition Author(s): Bunkoczi, G., Vertesy, L., Sheldrick, G.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free:
0.220 (Depositor)
R-Value Observed:
0.174 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

The Antiviral Antibiotic Feglymycin: First Direct Methods Solution of a 1000Plus Equal-Atom Structure

Bunkoczi, G., Vertesy, L., Sheldrick, G.M.

(2005) Angew Chem Int Ed Engl 44: 1340

PubMed: 15674989 Search on PubMed
DOI: https://doi.org/10.1002/anie.200461933
Primary Citation Related Structures:
1W7Q, 1W7R

Organizational Affiliation

Lehrstuhl für Strukturchemie, Georg-August Universität, Tammannstrasse 4, 37077 Göttingen, Germany.

Macromolecule Content

Total Structure Weight: 15.64 kDa
Atom Count: 1,239
Modeled Residue Count: 104
Deposited Residue Count: 104
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FEGLYMYCIN	A, B, C, D, E A, B, C, D, E, F, G, H	13	Streptomyces sp.	Mutation(s): 0

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FLC Query on FLC Download:Ideal Coordinates CCD File SDF format, chain M [auth G] MOL2 format, chain M [auth G] mmCIF format, chain M [auth G]	M [auth G]	CITRATE ANION C₆ H₅ O₇ KRKNYBCHXYNGOX-UHFFFAOYSA-K		Interactions Focus chain M [auth G] Interactions & Density Focus chain M [auth G]
IPA Query on IPA Download:Ideal Coordinates CCD File SDF format, chain L [auth G] SDF format, chain K [auth E] SDF format, chain J [auth A] SDF format, chain I [auth A] MOL2 format, chain L [auth G] MOL2 format, chain K [auth E] MOL2 format, chain J [auth A] MOL2 format, chain I [auth A] mmCIF format, chain L [auth G] mmCIF format, chain K [auth E] mmCIF format, chain J [auth A] mmCIF format, chain I [auth A]	I [auth A], J [auth A], K [auth E], L [auth G]	ISOPROPYL ALCOHOL C₃ H₈ O KFZMGEQAYNKOFK-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth E] Focus chain L [auth G] Interactions & Density Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth E] Focus chain L [auth G]

Biologically Interesting Molecules (External Reference)

1 Unique

Entity ID: 1
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_000220 Query on PRD_000220	A, B, C, D, E A, B, C, D, E, F, G, H	FEGLYMYCIN	Polypeptide / Antimicrobial, Antiretroviral		Interactions Focus chain A Focus chain B Focus chain C Focus chain D Focus chain E Focus chain F Focus chain G Focus chain H Interactions & Density Focus chain A Focus chain B Focus chain C Focus chain D Focus chain E Focus chain F Focus chain G Focus chain H

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free: 0.220 (Depositor)
R-Value Observed: 0.174 (Depositor)

Space Group: P 6₄

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.302	α = 90
b = 60.302	β = 90
c = 83.748	γ = 120

Software Package:

Software Name	Purpose
SHELXL-97	refinement
HKL-2000	data reduction
SADABS	data scaling
EPMR	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2005-03-08

Deposition Author(s):

Bunkoczi, G.

Vertesy, L.

Sheldrick, G.M.

Revision History (Full details and data files)

Version 1.0: 2005-03-08
Type: Initial release
Version 1.1: 2011-07-13
Changes: Atomic model, Database references, Derived calculations, Structure summary, Version format compliance
Version 1.2: 2012-11-30
Changes: Other
Version 1.3: 2019-05-22
Changes: Data collection, Derived calculations, Other, Refinement description
Version 1.4: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description