1VOP | pdb_00001vop

CONSERVED RNA COMPONENT OF THE PEPTIDYL TRANSFERASE CENTER, NMR, 33 STRUCTURES

• PDB DOI: https://doi.org/10.2210/pdb1VOP/pdb
• NAKB: 1VOP

• Classification: RNA
• Mutation(s): No 


• Deposited: 1997-08-30 Released: 1997-12-24 
• Deposition Author(s): Puglisi, E.V., Puglisi, J.D.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 33 
• Selection Criteria: LOWEST ENERGY 

Literature

Structure of a conserved RNA component of the peptidyl transferase centre.

Puglisi, E.V., Green, R., Noller, H.F., Puglisi, J.D.

(1997) Nat Struct Biol 4: 775-778

• PubMed: 9334738 
• DOI: https://doi.org/10.1038/nsb1097-775
• Primary Citation Related Structures: 
  1VOP


• PubMed Abstract: 
  

  The structure of a conserved hairpin loop involved in peptidyl-tRNA recognition by 50S ribosomal subunits has been solved by NMR. The loop is closed by a novel G-C base pair and presents guanine residues for RNA recognition.

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 4.23 kDa 
• Atom Count: 283 
• Modeled Residue Count: 13 
• Deposited Residue Count: 13 
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
23S RIBOSOMAL RNA	A	13	N/A

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 33 
• Selection Criteria: LOWEST ENERGY 

Structure Validation

Entry History 

Deposition Data

• Released Date: 1997-12-24 
Deposition Author(s): Puglisi, E.V., Puglisi, J.D.

Revision History  

• Version 1.0: 1997-12-24
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Data collection, Database references, Derived calculations, Other
• Version 1.4: 2024-05-22
  Changes: Data collection