1VEK | pdb_00001vek

Solution Structure of RSGI RUH-011, a UBA Domain from Arabidopsis cDNA

PDB DOI: https://doi.org/10.2210/pdb1VEK/pdb

Classification: structural genomics, unknown function
Organism(s): Arabidopsis thaliana
Mutation(s): No

Deposited: 2004-03-31 Released: 2004-09-30
Deposition Author(s): Higuchi, Y., Abe, T., Hirota, H., Saito, K., Koshiba, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history.

Literature

Solution Structure of RSGI RUH-011, a UBA Domain from Arabidopsis cDNA

Higuchi, Y., Abe, T., Hirota, H., Saito, K., Koshiba, S., Kigawa, T., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 8.63 kDa
Atom Count: 600
Modeled Residue Count: 84
Deposited Residue Count: 84
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ubiquitin-specific protease 14, putative	A	84	Arabidopsis thaliana	Mutation(s): 0 Gene Names: Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K10D20 EC: 3.4.19.12
UniProt
Find proteins for Q8L6Y1 (Arabidopsis thaliana) Explore Q8L6Y1 Go to UniProtKB: Q8L6Y1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8L6Y1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2004-09-30

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2004-09-30
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-02
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2023-12-27
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.