1VE0 | pdb_00001ve0

Crystal structure of uncharacterized protein ST2072 from Sulfolobus tokodaii

• PDB DOI: https://doi.org/10.2210/pdb1VE0/pdb

• Classification: METAL BINDING PROTEIN
• Organism(s): Sulfurisphaera tokodaii
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2004-03-26 Released: 2005-03-22 
• Deposition Author(s): Tanabe, E., Horiike, Y., Tsumoto, K., Yasutake, Y., Yao, M., Tanaka, I., Kumagai, I.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.222 (Depositor), 0.222 (DCC) 
• R-Value Work: 
  0.181 (Depositor), 0.182 (DCC) 

Literature

Crystal structure of the uncharacterized protein ST2072 from Sulfolobus tokodaii

Tanabe, E., Horiike, Y., Tsumoto, K., Yasutake, Y., Yao, M., Tanaka, I., Kumagai, I.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 15.24 kDa 
• Atom Count: 1,100 
• Modeled Residue Count: 134 
• Deposited Residue Count: 134 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein (ST2072)	A	134	Sulfurisphaera tokodaii	Mutation(s): 3  Gene Names: ST2072
UniProt
Find proteins for Q96YV5 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore Q96YV5  Go to UniProtKB:  Q96YV5

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	B [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
ZN	C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Modified Residue	Modification Type	Formula	2D Diagram
MSE	A	MET	Selenomethionine	C5 H11 N O2 Se

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.222 (Depositor), 0.222 (DCC) 
• R-Value Work:  0.181 (Depositor), 0.182 (DCC) 

Space Group: P 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.72	α = 90
b = 71.72	β = 90
c = 71.72	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
CNS	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-03-22 
Deposition Author(s): Tanabe, E., Horiike, Y., Tsumoto, K., Yasutake, Y., Yao, M., Tanaka, I., Kumagai, I.

Revision History  

• Version 1.0: 2005-03-22
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2023-12-27
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-10-09
  Changes: Structure summary