1VDL | pdb_00001vdl

Solution Structure of RSGI RUH-013, a UBA domain in Mouse cDNA

PDB DOI: https://doi.org/10.2210/pdb1VDL/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Mus musculus
Mutation(s): No

Deposited: 2004-03-23 Released: 2004-09-23
Deposition Author(s): Doi-Katayama, Y., Hirota, H., Saito, K., Koshiba, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

wwPDB Validation 3D Report Full Report

Validation slider image for 1VDL

This is version 1.4 of the entry. See complete history.

Literature

Solution Structure of RSGI RUH-013, a UBA domain in Mouse cDNA

Doi-Katayama, Y., Hirota, H., Saito, K., Koshiba, S., Kigawa, T., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 8.42 kDa
Atom Count: 589
Modeled Residue Count: 80
Deposited Residue Count: 80
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin carboxyl-terminal hydrolase 25	A	80	Mus musculus	Mutation(s): 0 Gene Names: RIKEN cDNA 2610101O11 EC: 3.1.2.15 (PDB Primary Data), 3.4.19.12 (UniProt)
UniProt
Find proteins for P57080 (Mus musculus) Explore P57080 Go to UniProtKB: P57080
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P57080
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2004-09-23

Deposition Author(s):

Doi-Katayama, Y.

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2004-09-23
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-02
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2023-12-27
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.