1VD0 | pdb_00001vd0

Capsid stabilizing protein GPD, NMR, 20 Structures

PDB DOI: https://doi.org/10.2210/pdb1VD0/pdb
BMRB: 5807

Classification: VIRAL PROTEIN
Organism(s): Lambdavirus lambda
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2004-03-17 Released: 2005-03-29
Deposition Author(s): Iwai, H., Forrer, P., Pluckthun, A., Guntert, P., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

wwPDB Validation 3D Report Full Report

Validation slider image for 1VD0

This is version 2.1 of the entry. See complete history.

Literature

NMR solution structure of the monomeric form of the bacteriophage lambda capsid stabilizing protein gpD.

Iwai, H., Forrer, P., Pluckthun, A., Guntert, P.

(2005) J Biomol NMR 31: 351-356

PubMed: 15929002 Search on PubMed
DOI: https://doi.org/10.1007/s10858-005-0945-7
Primary Citation Related Structures:
1VD0

Organizational Affiliation

Tatsuo Miyazawa Memorial Program, RIKEN Genomic Sciences Center, Tsurumi, Yokohama, Japan. h.iwai@usask.ca

Macromolecule Content

Total Structure Weight: 11.45 kDa
Atom Count: 805
Modeled Residue Count: 109
Deposited Residue Count: 109
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Head decoration protein	A	109	Lambdavirus lambda	Mutation(s): 0
UniProt
Find proteins for P03712 (Escherichia phage lambda) Explore P03712 Go to UniProtKB: P03712
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03712
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2005-03-29

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2005-03-29
Type: Initial release
Version 1.1: 2007-10-05
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 2.0: 2022-03-02
Changes: Atomic model, Data collection, Database references, Derived calculations
Version 2.1: 2023-12-27
Changes: Data collection

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.