1V8H | pdb_00001v8h

Crystal structure of TT0351 protein from Thermus thermophilus HB8

PDB DOI: https://doi.org/10.2210/pdb1V8H/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Thermus thermophilus HB8
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2004-01-09 Released: 2005-01-18
Deposition Author(s): Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.20 Å
R-Value Free:
0.213 (Depositor), 0.220 (DCC)
R-Value Work:
0.211 (Depositor), 0.220 (DCC)
R-Value Observed:
0.212 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of SoxZ protein from Thermus thermophilus HB8

Kunishima, N.

To be published.

Macromolecule Content

Total Structure Weight: 23.52 kDa
Atom Count: 2,040
Modeled Residue Count: 212
Deposited Residue Count: 214
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
sulfur oxidation protein SoxZ	A, B	107	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SME6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SME6 Go to UniProtKB: Q5SME6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q5SME6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.20 Å
R-Value Free: 0.213 (Depositor), 0.220 (DCC)
R-Value Work: 0.211 (Depositor), 0.220 (DCC)
R-Value Observed: 0.212 (Depositor)

Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.759	α = 90
b = 84.759	β = 90
c = 59.882	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
SOLVE	phasing
CNS	refinement
HKL-2000	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2005-01-18

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2005-01-18
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-12-27
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.