Download MendeleyCrystal Structure of S.pombe Serine Racemase
Goto, M.To be published.
1V71
Crystal Structure of S.pombe Serine Racemase
- PDB DOI: https://doi.org/10.2210/pdb1V71/pdb
- Classification: ISOMERASE
- Organism(s): Schizosaccharomyces pombe
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2003-12-09 Released: 2005-06-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.249
- R-Value Work: 0.220
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein C320.14 in chromosome III | 323 | Schizosaccharomyces pombe | Mutation(s): 0 EC: 5.1.1 (PDB Primary Data), 5.1.1.18 (UniProt), 4.3.1.18 (UniProt), 4.3.1.17 (UniProt) |  | |
UniProt | |||||
Find proteins for O59791 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore O59791 Go to UniProtKB: O59791 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O59791 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP Query on PLP | C [auth A] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
| MG Query on MG | B [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.249
- R-Value Work: 0.220
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.47 | α = 90 |
| b = 148.17 | β = 90 |
| c = 64.2 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| SCALEPACK | data scaling |
| AMoRE | phasing |
| CNS | refinement |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Released Date: 2005-06-14 Deposition Author(s): Goto, M.
Revision History (Full details and data files)
- Version 1.0: 2005-06-14
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2023-12-27
Changes: Data collection, Database references, Derived calculations
