1V43 | pdb_00001v43

Crystal Structure of ATPase subunit of ABC Sugar Transporter

PDB DOI: https://doi.org/10.2210/pdb1V43/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Pyrococcus horikoshii
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2003-11-08 Released: 2004-11-16
Deposition Author(s): Ose, T., Fujie, T., Yao, M., Watanabe, N., Tanaka, I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.286 (Depositor), 0.286 (DCC)
R-Value Work:
0.235 (Depositor), 0.236 (DCC)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 1V43

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of the ATP-binding cassette of multisugar transporter from Pyrococcus horikoshii OT3

Ose, T., Fujie, T., Yao, M., Watanabe, N., Tanaka, I.

(2004) Proteins 57: 635-638

PubMed: 15382245 Search on PubMed
DOI: https://doi.org/10.1002/prot.20206
Primary Citation Related Structures:
1V43, 1VCI

Organizational Affiliation

Division of Biological Sciences, Graduate School of Science, Hokkaido University, Sapporo, Japan.

Macromolecule Content

Total Structure Weight: 42 kDa
Atom Count: 2,896
Modeled Residue Count: 353
Deposited Residue Count: 372
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
sugar-binding transport ATP-binding protein	A	372	Pyrococcus horikoshii	Mutation(s): 0 Gene Names: PH0022
UniProt
Find proteins for O57758 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O57758 Go to UniProtKB: O57758
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O57758
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.286 (Depositor), 0.286 (DCC)
R-Value Work: 0.235 (Depositor), 0.236 (DCC)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.907	α = 90
b = 79.907	β = 90
c = 130.569	γ = 90

Software Package:

Software Name	Purpose
MAR345	data collection
SCALA	data scaling
AMoRE	phasing
CNS	refinement
CCP4	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2004-11-16

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2004-11-16
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-04
Changes: Refinement description
Version 1.4: 2023-10-25
Changes: Data collection, Database references, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.