1V30

Crystal Structure Of Uncharacterized Protein PH0828 From Pyrococcus horikoshii

• PDB DOI: https://doi.org/10.2210/pdb1V30/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Pyrococcus horikoshii
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2003-10-21 Released: 2004-11-09 
• Deposition Author(s): Tajika, Y., Sakai, N., Yao, M., Watanabe, N., Tanaka, I.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Free: 0.229 
• R-Value Work: 0.217 
• R-Value Observed: 0.217 

Literature

Crystal structure of hypothetical protein PH0828 from Pyrococcus horikoshii.

Tajika, Y., Sakai, N., Tamura, T., Yao, M., Watanabe, N., Tanaka, I.

(2004) Proteins 57: 862-865

• PubMed: 15390261 
• DOI: https://doi.org/10.1002/prot.20255
• Primary Citation of Related Structures:  
  1V30

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Organizational Affiliation: 

Division of Biological Sciences, Graduate School of Science, Hokkaido University, Sapporo, Japan.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 14.97 kDa 
• Atom Count: 1,189 
• Modelled Residue Count: 118 
• Deposited Residue Count: 124 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical UPF0131 protein PH0828	A	124	Pyrococcus horikoshii	Mutation(s): 0  EC: 2.3.2
UniProt
Find proteins for O58558 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O58558  Go to UniProtKB:  O58558

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NHE	B [auth A]	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID C8 H17 N O3 S MKWKNSIESPFAQN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Free: 0.229 
• R-Value Work: 0.217 
• R-Value Observed: 0.217 
• Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.692	α = 90
b = 51.692	β = 90
c = 81.511	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALA	data scaling
SHARP	phasing
CNS	refinement
HKL-2000	data reduction
CCP4	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-11-09 
Deposition Author(s): Tajika, Y., Sakai, N., Yao, M., Watanabe, N., Tanaka, I.

Revision History  

• Version 1.0: 2004-11-09
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-12-27
  Changes: Data collection, Database references, Derived calculations