1UZA | pdb_00001uza

Crystallographic structure of a feruloyl esterase from Aspergillus niger

• PDB DOI: https://doi.org/10.2210/pdb1UZA/pdb

• Classification: HYDROLASE
• Organism(s): Aspergillus niger
• Expression System: Aspergillus oryzae
• Mutation(s): No 


• Deposited: 2004-03-05 Released: 2004-10-19 
• Deposition Author(s): McAuley, K.E., Svendsen, A., Patkar, S.A., Wilson, K.S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 
  0.188 (Depositor), 0.195 (DCC) 
• R-Value Work: 
  0.156 (Depositor), 0.166 (DCC) 
• R-Value Observed: 
  0.158 (Depositor) 

Starting Model: experimental

Literature

Structure of a Feruloyl Esterase from Aspergillus Niger

Mcauley, K.E., Svendsen, A., Patkar, S.A., Wilson, K.S.

(2004) Acta Crystallogr D Biol Crystallogr 60: 878

• PubMed: 15103133 
• DOI: https://doi.org/10.1107/S0907444904004937
• Primary Citation Related Structures: 
  1UWC, 1UZA


• PubMed Abstract: 
  

  The crystallographic structure of feruloyl esterase from Aspergillus niger has been determined to a resolution of 1.5 A by molecular replacement. The protein has an alpha/beta-hydrolase structure with a Ser-His-Asp catalytic triad; the overall fold of the protein is very similar to that of the fungal lipases. The structure of the enzyme-product complex was determined to a resolution of 1.08 A and reveals dual conformations for the serine and histidine residues at the active site.

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Organizational Affiliation: 
• CCLRC Daresbury Laboratory, Warrington, Cheshire WA4 4AD, England.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PQS (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PQS (software)

Macromolecule Content 

• Total Structure Weight: 57.58 kDa 
• Atom Count: 4,475 
• Modeled Residue Count: 520 
• Deposited Residue Count: 522 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FERULOYL ESTERASE A	A, B	261	Aspergillus niger	Mutation(s): 0  EC: 3.1.1.73
UniProt
Find proteins for O42807 (Aspergillus niger) Explore O42807  Go to UniProtKB:  O42807
Glycosylation
Glycosylation Sites: 1

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	C [auth A], E [auth B]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N
SO4	D [auth A], F [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free:  0.188 (Depositor), 0.195 (DCC) 
• R-Value Work:  0.156 (Depositor), 0.166 (DCC) 
• R-Value Observed: 0.158 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.298	α = 75.24
b = 39.681	β = 78.82
c = 77.071	γ = 71.3

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-10-19 
Deposition Author(s): McAuley, K.E., Svendsen, A., Patkar, S.A., Wilson, K.S.

Revision History  

• Version 1.0: 2004-10-19
  Type: Initial release
  
• Version 1.1: 2012-11-14
  Changes: Database references, Derived calculations, Non-polymer description, Other, Version format compliance
• Version 1.2: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Data collection, Derived calculations, Other, Structure summary
• Version 1.3: 2023-12-13
  Changes: Data collection, Database references, Refinement description, Structure summary
• Version 1.4: 2024-11-13
  Changes: Structure summary