1U8S | pdb_00001u8s

Crystal structure of putative glycine cleavage system transcriptional repressor

PDB DOI: https://doi.org/10.2210/pdb1U8S/pdb

Classification: TRANSCRIPTION
Organism(s): Vibrio cholerae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2004-08-06 Released: 2004-08-17
Deposition Author(s): Kumaran, D., Swaminathan, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free:
0.266 (Depositor), 0.258 (DCC)
R-Value Work:
0.222 (Depositor), 0.220 (DCC)
R-Value Observed:
0.222 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1U8S

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of putative glycine cleavage system transcriptional repressor

Kumaran, D., Swaminathan, S.

To be published.

Macromolecule Content

Total Structure Weight: 42.79 kDa
Atom Count: 2,708
Modeled Residue Count: 343
Deposited Residue Count: 384
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
glycine cleavage system transcriptional repressor, putative	A, B	192	Vibrio cholerae	Mutation(s): 0
UniProt
Find proteins for Q9KQ45 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KQ45 Go to UniProtKB: Q9KQ45
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9KQ45
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free: 0.266 (Depositor), 0.258 (DCC)
R-Value Work: 0.222 (Depositor), 0.220 (DCC)
R-Value Observed: 0.222 (Depositor)

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 145.022	α = 90
b = 145.022	β = 90
c = 51.506	γ = 120

Software Package:

Software Name	Purpose
CBASS	data collection
HKL-2000	data reduction
SOLVE	phasing
CNS	refinement
HKL-2000	data scaling
SHARP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2004-08-17

Deposition Author(s):

Swaminathan, S.

Revision History (Full details and data files)

Version 1.0: 2004-08-17
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-02-14
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.