1TD6 | pdb_00001td6

Crystal structure of the conserved hypothetical protein MP506/MPN330 (gi: 1674200)from Mycoplasma pneumoniae

PDB DOI: https://doi.org/10.2210/pdb1TD6/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Mycoplasmoides pneumoniae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2004-05-21 Released: 2004-12-07
Deposition Author(s): Das, D., Oganesyan, N., Yokota, H., Jancarik, J., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.298 (Depositor), 0.309 (DCC)
R-Value Work:
0.244 (Depositor), 0.255 (DCC)
R-Value Observed:
0.244 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1TD6

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the conserved hypothetical protein MPN330 (GI: 1674200) from Mycoplasma pneumoniae.

Das, D., Oganesyan, N., Yokota, H., Pufan, R., Kim, R., Kim, S.H.

(2004) Proteins 58: 504-508

PubMed: 15562512 Search on PubMed
DOI: https://doi.org/10.1002/prot.20316
Primary Citation Related Structures:
1TD6

Organizational Affiliation

Berkeley Structural Genomics Center, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.

Macromolecule Content

Total Structure Weight: 35.42 kDa
Atom Count: 2,406
Modeled Residue Count: 286
Deposited Residue Count: 306
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein MG237 homolog	A	306	Mycoplasmoides pneumoniae	Mutation(s): 0 Gene Names: MPN330, MP506
UniProt
Find proteins for P75455 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)) Explore P75455 Go to UniProtKB: P75455
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P75455
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.298 (Depositor), 0.309 (DCC)
R-Value Work: 0.244 (Depositor), 0.255 (DCC)
R-Value Observed: 0.244 (Depositor)

Space Group: I 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.84	α = 90
b = 82.84	β = 90
c = 225.04	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2004-12-07

Deposition Author(s):

Berkeley Structural Genomics Center (BSGC)

Revision History (Full details and data files)

Version 1.0: 2004-12-07
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-02-14
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.