1T9F

Structural genomics of Caenorhabditis elegans: Structure of a protein with unknown function

• PDB DOI: https://doi.org/10.2210/pdb1T9F/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Caenorhabditis elegans
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2004-05-16 Released: 2004-05-25 
• Deposition Author(s): Symersky, J., Li, S., Bunzel, R., Schormann, N., Luo, D., Huang, W.Y., Qiu, S., Gray, R., Zhang, Y., Arabashi, A., Lu, S., Luan, C.H., Tsao, J., DeLucas, L., Luo, M., Southeast Collaboratory for Structural Genomics (SECSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.267 
• R-Value Work: 0.217 
• R-Value Observed: 0.217 

Starting Model: experimental

Literature

Structural genomics of Caenorhabditis elegans: Structure of a protein with unknown function.

Symersky, J., Li, S., Bunzel, R., Schormann, N., Luo, D., Huang, W.Y., QIU, S., Gray, R., ZHANG, Y., ARABASHI, A., Lu, S., LUAN, C.H., Tsao, J., DeLucas, L., Luo, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 20.69 kDa 
• Atom Count: 1,505 
• Modelled Residue Count: 178 
• Deposited Residue Count: 187 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
protein 1d10	A	187	Caenorhabditis elegans	Mutation(s): 0
UniProt
Find proteins for O61793 (Caenorhabditis elegans) Explore O61793  Go to UniProtKB:  O61793

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MLI	B [auth A]	MALONATE ION C3 H2 O4 OFOBLEOULBTSOW-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.267 
• R-Value Work: 0.217 
• R-Value Observed: 0.217 
• Space Group: P 6₄

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.376	α = 90
b = 76.376	β = 90
c = 57.388	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing
RESOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-05-25 
Deposition Author(s): Symersky, J., Li, S., Bunzel, R., Schormann, N., Luo, D., Huang, W.Y., Qiu, S., Gray, R., Zhang, Y., Arabashi, A., Lu, S., Luan, C.H., Tsao, J., DeLucas, L., Luo, M., Southeast Collaboratory for Structural Genomics (SECSG)

Revision History  

• Version 1.0: 2004-05-25
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-04-03
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.4: 2024-10-30
  Changes: Structure summary