1SVF

PARAMYXOVIRUS SV5 FUSION PROTEIN CORE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.181 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Structural basis for paramyxovirus-mediated membrane fusion.

Baker, K.A.Dutch, R.E.Lamb, R.A.Jardetzky, T.S.

(1999) Mol Cell 3: 309-319

  • DOI: https://doi.org/10.1016/s1097-2765(00)80458-x
  • Primary Citation of Related Structures:  
    1SVF

  • PubMed Abstract: 

    Paramyxoviruses are responsible for significant human mortality and disease worldwide, but the molecular mechanisms underlying their entry into host cells remain poorly understood. We have solved the crystal structure of a fragment of the simian parainfluenza virus 5 fusion protein (SV5 F), revealing a 96 A long coiled coil surrounded by three antiparallel helices. This structure places the fusion and transmembrane anchor of SV5 F in close proximity with a large intervening domain at the opposite end of the coiled coil. Six amino acids, potentially part of the fusion peptide, form a segment of the central coiled coil, suggesting that this structure extends into the membrane. Deletion mutants of SV5 F indicate that putative flexible tethers between the coiled coil and the viral membrane are dispensable for fusion. The lack of flexible tethers may couple a final conformational change in the F protein directly to the fusion of two bilayers.


  • Organizational Affiliation

    Department of Biochemistry, Molecular Biology, and Cell Biology, Northwestern University, Evanston, Illinois 60208-3500, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PROTEIN (FUSION GLYCOPROTEIN)
A, C
64Simian virus 5 (strain W3)Mutation(s): 1 
Gene Names: FUSION PROTEIN
Membrane Entity: Yes 
UniProt
Find proteins for P04849 (Parainfluenza virus 5 (strain W3))
Explore P04849 
Go to UniProtKB:  P04849
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP04849
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
PROTEIN (FUSION GLYCOPROTEIN)
B, D
38Simian virus 5 (strain W3)Mutation(s): 0 
Gene Names: FUSION PROTEIN
Membrane Entity: Yes 
UniProt
Find proteins for P04849 (Parainfluenza virus 5 (strain W3))
Explore P04849 
Go to UniProtKB:  P04849
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP04849
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.181 
  • Space Group: P 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 41.6α = 90
b = 41.6β = 90
c = 95.6γ = 120
Software Package:
Software NamePurpose
RSPSmodel building
SHARPphasing
CNSrefinement
DENZOdata reduction
SCALEPACKdata scaling
RSPSphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-03-26
    Type: Initial release
  • Version 1.1: 2008-04-26
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2021-11-03
    Changes: Database references, Derived calculations
  • Version 1.4: 2023-12-27
    Changes: Data collection