1SRO | pdb_00001sro

S1 RNA BINDING DOMAIN, NMR, 20 STRUCTURES


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Submitted: 20 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold.

Bycroft, M.Hubbard, T.J.Proctor, M.Freund, S.M.Murzin, A.G.

(1997) Cell 88: 235-242

  • DOI: https://doi.org/10.1016/s0092-8674(00)81844-9
  • Primary Citation Related Structures: 
    1SRO

  • PubMed Abstract: 

    The S1 domain, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the E. coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site. The structure of the S1 domain is very similar to that of cold shock protein, suggesting that they are both derived from an ancient nucleic acid-binding protein. Enhanced sequence searches reveal hitherto unidentified S1 domains in RNase E, RNase II, NusA, EMB-5, and other proteins.


  • Organizational Affiliation
    • Department of Chemistry, University of Cambridge, United Kingdom.

Macromolecule Content 

  • Total Structure Weight: 8.38 kDa 
  • Atom Count: 589 
  • Modeled Residue Count: 76 
  • Deposited Residue Count: 76 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
PNPASE76Escherichia coliMutation(s): 0 
EC: 2.7.7.8
UniProt
Find proteins for P05055 (Escherichia coli (strain K12))
Explore P05055 
Go to UniProtKB:  P05055
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP05055
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Submitted: 20 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Released Date: 1997-04-01 
  • Deposition Author(s): Bycroft, M.

Revision History  (Full details and data files)

  • Version 1.0: 1997-04-01
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-03-02
    Changes: Database references, Derived calculations, Other
  • Version 1.4: 2024-05-22
    Changes: Data collection