1SF9 | pdb_00001sf9

Crystal Structure of Bacillus subtilis YfhH Protein : Putative Transcriptional Regulator

• PDB DOI: https://doi.org/10.2210/pdb1SF9/pdb

• Classification: Structural Genomics, unknown function
• Organism(s): Bacillus subtilis
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2004-02-19 Released: 2004-02-24 
• Deposition Author(s): Minasov, G., Shuvalova, L., Brunzelle, J.S., Kim, D.E., Collart, F.R., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.71 Å
• R-Value Free: 
  0.204 (Depositor), 0.200 (DCC) 
• R-Value Work: 
  0.172 (Depositor), 0.167 (DCC) 

Literature

Crystal Structure of Bacillus Subtilis YfhH hypothetical protein

Minasov, G., Shuvalova, L., Brunzelle, J.S., Kim, D.E., Collart, F.R., Anderson, W.F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 15 kDa 
• Atom Count: 1,268 
• Modeled Residue Count: 118 
• Deposited Residue Count: 128 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
yfhH hypothetical protein	A	128	Bacillus subtilis	Mutation(s): 0  Gene Names: yfhH
UniProt
Find proteins for O31576 (Bacillus subtilis (strain 168)) Explore O31576  Go to UniProtKB:  O31576

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PT	B [auth A]	PLATINUM (II) ION Pt HRGDZIGMBDGFTC-UHFFFAOYSA-N
CL	C [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.71 Å
• R-Value Free:  0.204 (Depositor), 0.200 (DCC) 
• R-Value Work:  0.172 (Depositor), 0.167 (DCC) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.142	α = 90
b = 46.486	β = 114.98
c = 50.511	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
CNS	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-02-24 
Deposition Author(s): Minasov, G., Shuvalova, L., Brunzelle, J.S., Kim, D.E., Collart, F.R., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2004-02-24
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-02-14
  Changes: Data collection, Database references, Derived calculations