1SCJ | pdb_00001scj

CRYSTAL STRUCTURE OF SUBTILISIN-PROPEPTIDE COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 
    0.220 (Depositor), 0.217 (DCC) 
  • R-Value Work: 
    0.173 (Depositor), 0.171 (DCC) 
  • R-Value Observed: 
    0.173 (Depositor) 

Starting Models: experimental
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This is version 1.5 of the entry. See complete history

Literature

The crystal structure of an autoprocessed Ser221Cys-subtilisin E-propeptide complex at 2.0 A resolution.

Jain, S.C.Shinde, U.Li, Y.Inouye, M.Berman, H.M.

(1998) J Mol Biology 284: 137-144

  • DOI: https://doi.org/10.1006/jmbi.1998.2161
  • Primary Citation Related Structures: 
    1SCJ

  • PubMed Abstract: 

    We report here the crystallographic structure determination of an autoprocessed (Ser221Cys)-subtilisin E-propeptide complex at 2.0 A resolution. The subtilisin domain sequence has a single substitution (Ser221Cys) which has been shown to block the maturation process prior to degradation of the propeptide domain (77 residues) that acts as an intramolecular chaperon. This mutation, however, did not prevent the enzyme from cleaving its propeptide domain with a 60-80% efficiency. The current determination is the first example of a subtilisin E-propeptide complex which has been autoprocessed. A previous structure determination of a BPN'-prosegment complex has been reported in which the subtilisin domain was extensively mutated and a calcium binding loop was deleted. Further, in this earlier determination, the complex was formed by the addition of separately expressed propeptide domain. The structure determination reported here provides additional information about the nature of the interaction between the subtilisin and propeptide domains in this complex.


  • Organizational Affiliation
    • Department of Chemistry, Rutgers University, 610 Taylor Road, Piscataway, NJ, 08854-8087, USA.

Macromolecule Content 

  • Total Structure Weight: 35.81 kDa 
  • Atom Count: 2,703 
  • Modeled Residue Count: 346 
  • Deposited Residue Count: 346 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
SUBTILISIN E275Bacillus subtilisMutation(s): 1 
EC: 3.4.21.62
UniProt
Find proteins for P04189 (Bacillus subtilis (strain 168))
Explore P04189 
Go to UniProtKB:  P04189
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP04189
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
SUBTILISIN E71Bacillus subtilisMutation(s): 0 
EC: 3.4.21.62
UniProt
Find proteins for P04189 (Bacillus subtilis (strain 168))
Explore P04189 
Go to UniProtKB:  P04189
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP04189
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free:  0.220 (Depositor), 0.217 (DCC) 
  • R-Value Work:  0.173 (Depositor), 0.171 (DCC) 
  • R-Value Observed: 0.173 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.544α = 90
b = 92.21β = 90
c = 47.415γ = 90
Software Package:
Software NamePurpose
CNSrefinement
DENZOdata reduction
SCALEPACKdata scaling
CNSphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1998-12-09
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-03-14
    Changes: Database references
  • Version 1.4: 2023-08-09
    Changes: Database references, Derived calculations, Refinement description
  • Version 1.5: 2024-05-22
    Changes: Data collection