1S4Z

HP1 chromo shadow domain in complex with PXVXL motif of CAF-1


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 25 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural basis of HP1/PXVXL motif peptide interactions and HP1 localisation to heterochromatin.

Thiru, A.Nietlispach, D.Mott, H.R.Okuwaki, M.Lyon, D.Nielsen, P.R.Hirshberg, M.Verreault, A.Murzina, N.V.Laue, E.D.

(2004) EMBO J 23: 489-499

  • DOI: https://doi.org/10.1038/sj.emboj.7600088
  • Primary Citation of Related Structures:  
    1S4Z

  • PubMed Abstract: 

    HP1 family proteins are adaptor molecules, containing two related chromo domains that are required for chromatin packaging and gene silencing. Here we present the structure of the chromo shadow domain from mouse HP1beta bound to a peptide containing a consensus PXVXL motif found in many HP1 binding partners. The shadow domain exhibits a novel mode of peptide recognition, where the peptide binds across the dimer interface, sandwiched in a beta-sheet between strands from each monomer. The structure allows us to predict which other shadow domains bind similar PXVXL motif-containing peptides and provides a framework for predicting the sequence specificity of the others. We show that targeting of HP1beta to heterochromatin requires shadow domain interactions with PXVXL-containing proteins in addition to chromo domain recognition of Lys-9-methylated histone H3. Interestingly, it also appears to require the simultaneous recognition of two Lys-9-methylated histone H3 molecules. This finding implies a further complexity to the histone code for regulation of chromatin structure and suggests how binding of HP1 family proteins may lead to its condensation.


  • Organizational Affiliation

    Department of Biochemistry, Cambridge Centre for Molecular Recognition, University of Cambridge, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Chromobox protein homolog 1
A, B
75Mus musculusMutation(s): 1 
Gene Names: CBX1CBX
UniProt & NIH Common Fund Data Resources
Find proteins for P83917 (Mus musculus)
Explore P83917 
Go to UniProtKB:  P83917
IMPC:  MGI:105369
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP83917
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin assembly factor 1 subunit A30Mus musculusMutation(s): 0 
Gene Names: CHAF1ACAIP150
UniProt
Find proteins for Q9QWF0 (Mus musculus)
Explore Q9QWF0 
Go to UniProtKB:  Q9QWF0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9QWF0
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 25 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-03-23
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2021-10-27
    Changes: Database references, Derived calculations