1RI9 | pdb_00001ri9

Structure of a helically extended SH3 domain of the T cell adapter protein ADAP


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 51 
  • Conformers Submitted: 20 
  • Selection Criteria: The submitted conformer models are the 20 structures with the lowest energy. 

wwPDB Validation 3D Report Full Report

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This is version 1.5 of the entry. See complete history

Literature

Structure of a Helically Extended SH3 Domain of the T Cell Adapter Protein ADAP.

Heuer, K.Kofler, M.Langdon, G.Thiemke, K.Freund, C.

(2004) Structure 12: 603-610

  • DOI: https://doi.org/10.1016/j.str.2004.02.021
  • Primary Citation Related Structures: 
    1RI9

  • PubMed Abstract: 

    The adapter protein ADAP (FYB/SLAP-130) provides a critical link between T cell receptor (TCR) signaling and cell adhesion via the activation of integrins. The C-terminal 70 residues of ADAP show homology to SH3 domains; however, conserved residues of the fold are absent. An alignment and annotation of this domain has therefore been elusive. We have solved the three-dimensional structure of the ADAP C-terminal domain by NMR spectroscopy and show that it represents an altered SH3 domain fold. An N-terminal, amphipathic helix makes extensive contacts to residues of the regular SH3 domain fold, and thereby a composite surface with unusual surface properties is created. We propose this SH3 domain variant to be classified as a helically extended SH3 domain (hSH3 domain) and show that the ADAP-hSH3 domain can no longer bind conventional proline-rich peptides.


  • Organizational Affiliation
    • Protein Engineering Group, Forschungsinstitut für Molekulare Pharmakologie and Freie Universität Berlin, Robert-Rössle-Strasse 10, 13125 Berlin, Germany.

Macromolecule Content 

  • Total Structure Weight: 11.9 kDa 
  • Atom Count: 634 
  • Modeled Residue Count: 77 
  • Deposited Residue Count: 102 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
FYN-binding protein102Homo sapiensMutation(s): 0 
Gene Names: FYBSLAP130
UniProt & NIH Common Fund Data Resources
Find proteins for O15117 (Homo sapiens)
Explore O15117 
Go to UniProtKB:  O15117
PHAROS:  O15117
GTEx:  ENSG00000082074 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO15117
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 51 
  • Conformers Submitted: 20 
  • Selection Criteria: The submitted conformer models are the 20 structures with the lowest energy. 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-04-20
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2020-02-05
    Changes: Data collection, Database references, Derived calculations, Other
  • Version 1.4: 2023-06-14
    Changes: Database references, Other
  • Version 1.5: 2024-05-08
    Changes: Data collection, Database references