1R33
Golgi alpha-mannosidase II complex with 5-thio-D-mannopyranosylamine
- PDB DOI: https://doi.org/10.2210/pdb1R33/pdb
- Classification: HYDROLASE
- Organism(s): Drosophila melanogaster
- Expression System: Drosophila melanogaster
- Mutation(s): No 
- Deposited: 2003-09-30 Released: 2004-11-02 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.185 
- R-Value Work: 0.156 
- R-Value Observed: 0.156 
This is version 2.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
putative golgi alpha-mannosidase II | 1,045 | Drosophila melanogaster | Mutation(s): 0  Gene Names: ALPHA-MAN-II OR GMII OR CG18474/CG18802/CG8139 EC: 3.2.1.114 | ||
UniProt | |||||
Find proteins for Q24451 (Drosophila melanogaster) Explore Q24451  Go to UniProtKB:  Q24451 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q24451 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | B [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
LKA Query on LKA | D [auth A] | 5-thio-alpha-D-mannopyranosylamine C6 H13 N O4 S FGVRMLQUWLZGLJ-PQMKYFCFSA-N | |||
MPD Query on MPD | E [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | |||
ZN Query on ZN | C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.185 
- R-Value Work: 0.156 
- R-Value Observed: 0.156 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 68.838 | α = 90 |
b = 109.911 | β = 90 |
c = 138.891 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
CNS | refinement |
CNS | phasing |
Entry History 
Deposition Data
- Released Date: 2004-11-02  Deposition Author(s): Kuntz, D.A., Xin, W., Kavelekar, L.M., Rose, D.R., Pinto, B.M.
Revision History (Full details and data files)
- Version 1.0: 2004-11-02
Type: Initial release - Version 1.1: 2007-10-16
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-05-13
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations - Version 2.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 2.2: 2023-08-23
Changes: Data collection, Database references, Refinement description, Structure summary