1R1F | pdb_00001r1f

Solution Structure of the Cyclotide Palicourein: Implications for the development of pharmaceutical and agricultural applications


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: lowest energy structures 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Solution structure of the cyclotide palicourein: implications for the development of a pharmaceutical framework.

Barry, D.G.Daly, N.L.Bokesch, H.R.Gustafson, K.R.Craik, D.J.

(2004) Structure 12: 85-94

  • DOI: https://doi.org/10.1016/j.str.2003.11.019
  • Primary Citation Related Structures: 
    1R1F

  • PubMed Abstract: 

    The cyclotides are a family of disulfide-rich proteins from plants. They have the characteristic structural features of a circular protein backbone and a knotted arrangement of disulfide bonds. Structural and biochemical studies of the cyclotides suggest that their unique physiological stability can be loaned to bioactive peptide fragments for pharmaceutical and agricultural development. In particular, the cyclotides incorporate a number of solvent-exposed loops that are potentially suitable for epitope grafting applications. Here, we determine the structure of the largest known cyclotide, palicourein, which has an atypical size and composition within one of the surface-exposed loops. The structural data show that an increase in size of a palicourein loop does not perturb the core fold, to which the thermodynamic and chemical stability has been attributed. The cyclotide core fold, thus, can in principle be used as a framework for the development of useful pharmaceutical and agricultural bioactivities.


  • Organizational Affiliation
    • Institute for Molecular Bioscience, Queensland Bioscience Precinct, The University of Queensland Brisbane, Queensland 4072, Australia.

Macromolecule Content 

  • Total Structure Weight: 3.93 kDa 
  • Atom Count: 268 
  • Modeled Residue Count: 37 
  • Deposited Residue Count: 37 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Palicourein37Palicourea condensataMutation(s): 0 
UniProt
Find proteins for P84645 (Palicourea condensata)
Explore P84645 
Go to UniProtKB:  P84645
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP84645
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: lowest energy structures 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-04-06
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2021-11-03
    Changes: Data collection, Database references, Derived calculations, Experimental preparation, Refinement description
  • Version 1.4: 2024-11-20
    Changes: Data collection, Structure summary