1QND | pdb_00001qnd

STEROL CARRIER PROTEIN-2, NMR, 20 STRUCTURES

• PDB DOI: https://doi.org/10.2210/pdb1QND/pdb
• BMRB: 4438

• Classification: TRANSFER PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 1999-10-14 Released: 2000-07-03 
• Deposition Author(s): Lopez-Garcia, F., Szyperski, T., Dyer, J.H., Choinowski, T., Seedorf, U., Hauser, H., Wuthrich, K.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Literature

NMR Structure of the Sterol Carrier Protein-2: Implications for the Biological Role

Lopez-Garcia, F., Szyperski, T., Dyer, J.H., Choinowski, T., Seedorf, U., Hauser, H., Wuthrich, K.

(2000) J Mol Biology 295: 595

• PubMed: 10623549 
• DOI: https://doi.org/10.1006/jmbi.1999.3355
• Primary Citation Related Structures: 
  1QND


• PubMed Abstract: 
  

  The determination of the NMR structure of the sterol carrier protein-2 (SCP2), analysis of backbone (15)N spin relaxation parameters and NMR studies of nitroxide spin-labeled substrate binding are presented as a new basis for investigations of the mode of action of SCP2. The SCP2 fold is formed by a five-stranded beta-sheet and four alpha-helices. Fatty acid binding to a hydrophobic surface area formed by amino acid residues of the first and third helices, and the beta-sheet, which are all located in the polypeptide segment 8-102, was identified with the use of the spin-labeled substrate 16-doxylstearic acid. In the free protein, the lipid-binding site is covered by the C-terminal segment 105-123, suggesting that this polypeptide segment, which carries the peroxisomal targeting signal (PTS1), might be involved in the regulation of ligand binding.

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Organizational Affiliation: 
• Institut für Molekularbiologie und Biophysik, Eidgenössische Technische Hochschule-Hönggerberg, Zürich, CH-8093, Switzerland.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 13.26 kDa 
• Atom Count: 927 
• Modeled Residue Count: 123 
• Deposited Residue Count: 123 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NONSPECIFIC LIPID-TRANSFER PROTEIN	A	123	Homo sapiens	Mutation(s): 0  EC: 2.3.1.176 (UniProt), 2.3.1.155 (UniProt), 2.3.1.16 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P22307 (Homo sapiens) Explore P22307  Go to UniProtKB:  P22307
PHAROS:  P22307 GTEx:  ENSG00000116171

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2000-07-03 
Deposition Author(s): Lopez-Garcia, F., Szyperski, T., Dyer, J.H., Choinowski, T., Seedorf, U., Hauser, H., Wuthrich, K.

Revision History  

• Version 1.0: 2000-07-03
  Type: Initial release
  
• Version 1.1: 2011-08-24
  Changes: Atomic model, Version format compliance
• Version 1.2: 2024-05-15
  Changes: Data collection, Database references, Other