1QGE | pdb_00001qge

NEW CRYSTAL FORM OF PSEUDOMONAS GLUMAE (FORMERLY CHROMOBACTERIUM VISCOSUM ATCC 6918) LIPASE

• PDB DOI: https://doi.org/10.2210/pdb1QGE/pdb

• Classification: HYDROLASE
• Organism(s): Burkholderia glumae
• Mutation(s): No 


• Deposited: 1999-04-27 Released: 1999-05-06 
• Deposition Author(s): Lang, D.A., Stadler, P., Kovacs, A., Paltauf, F., Dijkstra, B.W.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 
  0.228 (Depositor) 
• R-Value Work: 
  0.187 (Depositor) 
• R-Value Observed: 
  0.213 (Depositor) 

Starting Model: experimental

Literature

Structural and Kinetic Investigations of Enantiomeric Binding Mode of Subclass I Lipases from the Family of Pseudomonadaceae

Lang, D.A., Stadler, P., Kovacs, A., Paltauf, F., Dijkstra, B.W.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 33.17 kDa 
• Atom Count: 2,640 
• Modeled Residue Count: 316 
• Deposited Residue Count: 319 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PROTEIN (TRIACYLGLYCEROL HYDROLASE)	A [auth D]	222	Burkholderia glumae	Mutation(s): 0  EC: 3.1.1.3
UniProt
Find proteins for P0DUB9 (Pseudarthrobacter phenanthrenivorans) Explore P0DUB9  Go to UniProtKB:  P0DUB9

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
PROTEIN (TRIACYLGLYCEROL HYDROLASE)	B [auth E]	97	Burkholderia glumae	Mutation(s): 0  EC: 3.1.1.3
UniProt
Find proteins for P0DUB9 (Pseudarthrobacter phenanthrenivorans) Explore P0DUB9  Go to UniProtKB:  P0DUB9

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CA	C [auth E]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free:  0.228 (Depositor) 
• R-Value Work:  0.187 (Depositor) 
• R-Value Observed: 0.213 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 40.98	α = 90
b = 43.35	β = 90
c = 140.69	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 1999-05-06 
Deposition Author(s): Lang, D.A., Stadler, P., Kovacs, A., Paltauf, F., Dijkstra, B.W.

Revision History  

• Version 1.0: 1999-05-06
  Type: Initial release
  
• Version 1.1: 2007-10-16
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2019-11-27
  Changes: Database references
• Version 1.4: 2023-08-16
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.5: 2024-10-30
  Changes: Structure summary