1QEY | pdb_00001qey

NMR Structure Determination of the Tetramerization Domain of the MNT Repressor: An Asymmetric A-Helical Assembly in Slow Exchange


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 30 
  • Conformers Submitted: 27 
  • Selection Criteria: LOWEST ENERGY, LEAST RESTRAINT VIOLATION 

wwPDB Validation 3D Report Full Report

Validation slider image for 1QEY

This is version 1.4 of the entry. See complete history

Literature

The tetramerization domain of the Mnt repressor consists of two right-handed coiled coils.

Nooren, I.M.Kaptein, R.Sauer, R.T.Boelens, R.

(1999) Nat Struct Biol 6: 755-759

  • DOI: https://doi.org/10.1038/11531
  • Primary Citation Related Structures: 
    1QEY

  • PubMed Abstract: 

    The tetrameric Mnt repressor is involved in the genetic switch between the lysogenic and lytic growth of Salmonella bacteriophage P22. The solution structure of its C-terminal tetramerization domain, which holds together the two dimeric DNA-binding domains, has been determined by NMR spectroscopy. This structure reveals an assembly of four alpha-helical subunits, consisting of a dimer of two antiparallel coiled coils with a unique right-handed twist. The superhelical winding is considerably stronger and the interhelical separation closer than those found in the well-known left-handed coiled coils in fibrous proteins and leucine zippers. An unusual asymmetry arises between the two monomers that comprise one right-handed coiled coil. A difference in the packing to the adjacent monomer of the other coiled coil occurs with an offset of two helical turns. The two asymmetric monomers within each coiled coil interconvert on a time scale of seconds. Both with respect to symmetry and handedness of helical packing, the C2 symmetric four-helix bundle of Mnt differs from other oligomerization domains that assemble DNA-binding modules, such as that in the tumor suppressor p53 and the E. coli lac repressor.


  • Organizational Affiliation
    • Department of NMR Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands.

Macromolecule Content 

  • Total Structure Weight: 14.77 kDa 
  • Atom Count: 1,032 
  • Modeled Residue Count: 124 
  • Deposited Residue Count: 124 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
PROTEIN (REGULATORY PROTEIN MNT)
A, B, C, D
31Lederbergvirus P22Mutation(s): 0 
UniProt
Find proteins for P03049 (Salmonella phage P22)
Explore P03049 
Go to UniProtKB:  P03049
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP03049
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 30 
  • Conformers Submitted: 27 
  • Selection Criteria: LOWEST ENERGY, LEAST RESTRAINT VIOLATION 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-08-18
    Type: Initial release
  • Version 1.1: 2007-10-21
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2019-11-20
    Changes: Database references, Derived calculations
  • Version 1.4: 2023-12-27
    Changes: Data collection, Database references